Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 SPIB-206ENST00000596074 847 ntTSL 2 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 FSCN1P1-201ENST00000568912 1481 ntBASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
HIF3AQ9Y2N7 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
HIF3AQ9Y2N7 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
HIF3AQ9Y2N7 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
HIF3AQ9Y2N7 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.3
HIF3AQ9Y2N7 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 MCC-208ENST00000514701 2855 ntTSL 2 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 MESTP1-201ENST00000404287 994 ntBASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 TSPY20P-201ENST00000450910 630 ntBASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 AC126763.1-201ENST00000552015 2118 ntBASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HIF3AQ9Y2N7 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 AP000692.2-201ENST00000608391 879 ntBASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms