Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AL499627.1-201ENST00000569373 2188 ntBASIC19.42■□□□□ 0.7
AP4E1Q9UPM8 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 AC116562.4-202ENST00000641738 218 ntBASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
AP4E1Q9UPM8 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 TSPY14P-201ENST00000303979 915 ntBASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 NAPSB-206ENST00000562112 1266 ntBASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 AC010947.1-201ENST00000623454 693 ntBASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
AP4E1Q9UPM8 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 AC007663.1-201ENST00000438948 1240 ntBASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 EGLN1P1-201ENST00000531623 762 ntBASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 BX088651.1-201ENST00000540551 451 ntBASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
AP4E1Q9UPM8 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 AC005082.1-201ENST00000413042 2259 ntBASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 AC036111.1-201ENST00000533973 1582 ntBASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 MIR3180-5-201ENST00000583743 153 ntBASIC19.38■□□□□ 0.69
AP4E1Q9UPM8 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms