Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP29Q9HBJ7 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP29Q9HBJ7 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP29Q9HBJ7 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP29Q9HBJ7 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP29Q9HBJ7 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.29■□□□□ 0.68
USP29Q9HBJ7 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.29■□□□□ 0.68
USP29Q9HBJ7 AL499627.1-201ENST00000569373 2188 ntBASIC19.29■□□□□ 0.68
USP29Q9HBJ7 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP29Q9HBJ7 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
USP29Q9HBJ7 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 AC073592.3-201ENST00000625118 1834 ntBASIC19.28■□□□□ 0.68
USP29Q9HBJ7 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP29Q9HBJ7 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 FAM207BP-201ENST00000447172 505 ntBASIC19.27■□□□□ 0.68
USP29Q9HBJ7 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 AP000692.2-201ENST00000608391 879 ntBASIC19.27■□□□□ 0.68
USP29Q9HBJ7 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP29Q9HBJ7 AC079598.2-202ENST00000546624 1451 ntBASIC19.27■□□□□ 0.67
USP29Q9HBJ7 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP29Q9HBJ7 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP29Q9HBJ7 AC007613.1-201ENST00000572811 2597 ntBASIC19.27■□□□□ 0.67
USP29Q9HBJ7 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
USP29Q9HBJ7 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
USP29Q9HBJ7 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
USP29Q9HBJ7 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP29Q9HBJ7 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.27■□□□□ 0.67
USP29Q9HBJ7 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 FITM1-202ENST00000559294 800 ntBASIC19.26■□□□□ 0.67
USP29Q9HBJ7 NAPSB-206ENST00000562112 1266 ntBASIC19.26■□□□□ 0.67
USP29Q9HBJ7 AP000525.1-201ENST00000608286 694 ntBASIC19.26■□□□□ 0.67
USP29Q9HBJ7 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP29Q9HBJ7 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms