Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.133e-7■■■□□ 17.5
UPF1Q92900 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.2□□□□□ -0.143e-7■■■□□ 17.5
UPF1Q92900 NUP98-220ENST00000533346 580 ntTSL 213.99□□□□□ -0.173e-7■■■□□ 17.5
UPF1Q92900 GATD1-215ENST00000533960 299 ntTSL 215.85■□□□□ 0.135e-13■■■□□ 17.5
UPF1Q92900 NONO-202ENST00000373841 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.249e-22■■■□□ 17.4
UPF1Q92900 NONO-215ENST00000535149 2882 ntTSL 2 BASIC12.25□□□□□ -0.459e-22■■■□□ 17.4
UPF1Q92900 NONO-201ENST00000276079 2713 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.69e-22■■■□□ 17.4
UPF1Q92900 NONO-210ENST00000472185 397 ntTSL 510.51□□□□□ -0.739e-22■■■□□ 17.4
UPF1Q92900 NONO-214ENST00000490044 3215 ntTSL 28.54□□□□□ -1.049e-22■■■□□ 17.4
UPF1Q92900 CTSA-210ENST00000606000 644 ntTSL 317.48■□□□□ 0.393e-12■■■□□ 17.4
UPF1Q92900 CLASP1-201ENST00000263710 8092 ntTSL 5 BASIC10.28□□□□□ -0.767e-7■■■□□ 17.4
UPF1Q92900 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC9.03□□□□□ -0.967e-7■■■□□ 17.4
UPF1Q92900 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC8.98□□□□□ -0.977e-7■■■□□ 17.4
UPF1Q92900 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC8.72□□□□□ -1.017e-7■■■□□ 17.4
UPF1Q92900 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.082e-6■■■□□ 17.4
UPF1Q92900 MED15-225ENST00000477824 571 ntTSL 529.18■■■□□ 2.261e-10■■■□□ 17.4
UPF1Q92900 NUBP2-212ENST00000568287 839 ntTSL 529.11■■■□□ 2.252e-7■■■□□ 17.4
UPF1Q92900 MED15-210ENST00000432052 598 ntTSL 429.08■■■□□ 2.251e-10■■■□□ 17.4
UPF1Q92900 MED15-215ENST00000444094 551 ntTSL 427.48■■□□□ 1.991e-10■■■□□ 17.4
UPF1Q92900 MED15-205ENST00000414658 717 ntTSL 326.03■■□□□ 1.761e-10■■■□□ 17.4
UPF1Q92900 MED15-227ENST00000486656 577 ntTSL 426.03■■□□□ 1.761e-10■■■□□ 17.4
UPF1Q92900 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC23.45■■□□□ 1.342e-7■■■□□ 17.4
UPF1Q92900 BAD-207ENST00000544785 525 ntTSL 3 BASIC23.31■■□□□ 1.322e-7■■■□□ 17.4
UPF1Q92900 MED15-217ENST00000445987 590 ntTSL 423.19■■□□□ 1.31e-10■■■□□ 17.4
UPF1Q92900 NSUN2-208ENST00000513888 1290 ntTSL 222.71■■□□□ 1.232e-7■■■□□ 17.4
UPF1Q92900 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.072e-7■■■□□ 17.4
UPF1Q92900 MCM2-207ENST00000477668 2510 ntTSL 220.52■□□□□ 0.872e-7■■■□□ 17.4
UPF1Q92900 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.712e-7■■■□□ 17.4
UPF1Q92900 MCM2-206ENST00000474964 2847 ntTSL 217.47■□□□□ 0.392e-7■■■□□ 17.4
UPF1Q92900 PTK2-218ENST00000519993 4388 ntTSL 1 (best)17.39■□□□□ 0.372e-7■■■□□ 17.4
UPF1Q92900 NSUN2-203ENST00000504374 3217 ntTSL 216.21■□□□□ 0.192e-7■■■□□ 17.4
UPF1Q92900 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.172e-7■■■□□ 17.4
UPF1Q92900 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC13.61□□□□□ -0.232e-7■■■□□ 17.4
UPF1Q92900 LYSMD1-202ENST00000440902 1003 ntTSL 2 BASIC12.13□□□□□ -0.472e-7■■■□□ 17.4
UPF1Q92900 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC9.54□□□□□ -0.882e-7■■■□□ 17.4
UPF1Q92900 NSUN2-205ENST00000505892 3558 ntTSL 1 (best)9.08□□□□□ -0.962e-7■■■□□ 17.4
UPF1Q92900 AC020915.1-208ENST00000590505 3889 ntTSL 28.51□□□□□ -1.052e-7■■■□□ 17.4
UPF1Q92900 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC8.17□□□□□ -1.12e-7■■■□□ 17.4
UPF1Q92900 PTK2-246ENST00000523539 3236 ntTSL 28.11□□□□□ -1.112e-7■■■□□ 17.4
UPF1Q92900 PTK2-240ENST00000522684 4955 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.162e-7■■■□□ 17.4
UPF1Q92900 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.212e-7■■■□□ 17.4
UPF1Q92900 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC7.28□□□□□ -1.242e-7■■■□□ 17.4
UPF1Q92900 PTK2-215ENST00000519654 4129 ntTSL 1 (best)7.08□□□□□ -1.282e-7■■■□□ 17.4
UPF1Q92900 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.48□□□□□ -1.372e-7■■■□□ 17.4
UPF1Q92900 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC6.29□□□□□ -1.42e-7■■■□□ 17.4
UPF1Q92900 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC6.11□□□□□ -1.432e-7■■■□□ 17.4
UPF1Q92900 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.092e-6■■■□□ 17.4
UPF1Q92900 INTS1-206ENST00000493446 675 ntTSL 317.8■□□□□ 0.444e-7■■■□□ 17.4
UPF1Q92900 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.244e-7■■■□□ 17.4
UPF1Q92900 PFKFB2-203ENST00000411990 1876 ntTSL 212.19□□□□□ -0.467e-7■■■□□ 17.4
UPF1Q92900 PFKFB2-206ENST00000473310 892 ntTSL 29.31□□□□□ -0.927e-7■■■□□ 17.4
UPF1Q92900 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC6.98□□□□□ -1.297e-7■■■□□ 17.4
UPF1Q92900 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.477e-7■■■□□ 17.4
UPF1Q92900 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.241e-10■■■□□ 17.4
UPF1Q92900 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC12.5□□□□□ -0.411e-10■■■□□ 17.4
UPF1Q92900 ATXN7L3-211ENST00000591807 542 ntTSL 419.96■□□□□ 0.792e-7■■■□□ 17.4
UPF1Q92900 ATXN7L3-206ENST00000589607 573 ntTSL 419.23■□□□□ 0.672e-7■■■□□ 17.4
UPF1Q92900 ATXN7L3-204ENST00000587022 298 ntTSL 314.09□□□□□ -0.152e-7■■■□□ 17.4
UPF1Q92900 ATXN7L3-209ENST00000590537 539 ntTSL 413.84□□□□□ -0.192e-7■■■□□ 17.4
UPF1Q92900 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.117e-7■■■□□ 17.4
UPF1Q92900 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC22.9■■□□□ 1.261e-6■■■□□ 17.4
UPF1Q92900 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.971e-6■■■□□ 17.4
UPF1Q92900 RNF216P1-203ENST00000404404 2427 ntBASIC18.55■□□□□ 0.561e-6■■■□□ 17.4
UPF1Q92900 RNF216P1-202ENST00000404006 2201 ntTSL 1 (best)15.4■□□□□ 0.061e-6■■■□□ 17.4
UPF1Q92900 RNF216P1-210ENST00000471244 3632 ntTSL 210.25□□□□□ -0.771e-6■■■□□ 17.4
UPF1Q92900 ZNF3-205ENST00000413658 1441 ntTSL 1 (best) BASIC13.53□□□□□ -0.241e-7■■■□□ 17.4
UPF1Q92900 ZNF3-215ENST00000487620 2660 ntTSL 29.91□□□□□ -0.822e-8■■■□□ 17.4
UPF1Q92900 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.891e-7■■■□□ 17.4
UPF1Q92900 ZNF3-207ENST00000424697 2718 ntAPPRIS P1 TSL 3 BASIC9.01□□□□□ -0.971e-7■■■□□ 17.4
UPF1Q92900 ZNF3-202ENST00000299667 2799 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.021e-7■■■□□ 17.4
UPF1Q92900 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.833e-8■■■□□ 17.4
UPF1Q92900 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.63■□□□□ 0.573e-8■■■□□ 17.4
UPF1Q92900 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.6■□□□□ 0.413e-8■■■□□ 17.4
UPF1Q92900 PPP6R3-204ENST00000393801 5069 ntTSL 1 (best) BASIC11.66□□□□□ -0.543e-7■■■□□ 17.4
UPF1Q92900 PPP6R3-203ENST00000393800 5093 ntAPPRIS P4 TSL 1 (best) BASIC11.11□□□□□ -0.633e-7■■■□□ 17.4
UPF1Q92900 PPP6R3-201ENST00000265636 4794 ntTSL 1 (best) BASIC10.66□□□□□ -0.73e-7■■■□□ 17.4
UPF1Q92900 PPP6R3-218ENST00000529710 3228 ntTSL 1 (best) BASIC10.16□□□□□ -0.783e-7■■■□□ 17.4
UPF1Q92900 PPP6R3-202ENST00000265637 4783 ntTSL 5 BASIC10.13□□□□□ -0.793e-7■■■□□ 17.4
UPF1Q92900 PPP6R3-214ENST00000527403 4862 ntTSL 5 BASIC9.55□□□□□ -0.883e-7■■■□□ 17.4
UPF1Q92900 SRRM2-216ENST00000573583 543 ntTSL 411.57□□□□□ -0.563e-15■■■□□ 17.4
UPF1Q92900 ERCC1-204ENST00000423698 3119 ntTSL 2 BASIC12.02□□□□□ -0.488e-7■■■□□ 17.4
UPF1Q92900 ERCC1-202ENST00000300853 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.628e-7■■■□□ 17.4
UPF1Q92900 LASP1-207ENST00000581485 617 ntTSL 324.02■■□□□ 1.444e-31■■■□□ 17.4
UPF1Q92900 LASP1-202ENST00000419929 762 ntTSL 323.5■■□□□ 1.354e-31■■■□□ 17.4
UPF1Q92900 CS-202ENST00000542324 1893 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.652e-69■■■□□ 17.4
UPF1Q92900 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC23.39■■□□□ 1.332e-9■■■□□ 17.4
UPF1Q92900 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.37■□□□□ 0.532e-9■■■□□ 17.4
UPF1Q92900 SORBS1-212ENST00000371249 5927 ntAPPRIS P3 TSL 1 (best) BASIC9.04□□□□□ -0.961e-6■■■□□ 17.4
UPF1Q92900 SORBS1-210ENST00000371246 6931 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.971e-6■■■□□ 17.4
UPF1Q92900 SORBS1-211ENST00000371247 7354 ntAPPRIS ALT2 TSL 5 BASIC8.52□□□□□ -1.041e-6■■■□□ 17.4
UPF1Q92900 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.31e-6■■■□□ 17.4
UPF1Q92900 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.311e-6■■■□□ 17.4
UPF1Q92900 PIP4K2C-201ENST00000354947 2924 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.193e-7■■■□□ 17.4
UPF1Q92900 PIP4K2C-203ENST00000540759 2876 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.283e-7■■■□□ 17.4
UPF1Q92900 IGFL2-AS1-203ENST00000598518 1037 ntTSL 1 (best) BASIC15.45■□□□□ 0.062e-9■■■□□ 17.4
UPF1Q92900 IGFL2-AS1-205ENST00000599817 340 ntTSL 214.9□□□□□ -0.022e-9■■■□□ 17.4
UPF1Q92900 IGFL2-AS1-201ENST00000594027 294 ntTSL 314.06□□□□□ -0.162e-9■■■□□ 17.4
UPF1Q92900 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.61■□□□□ 0.571e-7■■■□□ 17.4
UPF1Q92900 RAP1GAP2-203ENST00000540393 3218 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.161e-7■■■□□ 17.4
UPF1Q92900 RAP1GAP2-204ENST00000542807 3110 ntAPPRIS P4 TSL 5 BASIC13.81□□□□□ -0.21e-7■■■□□ 17.4
Retrieved 100 of 15,879 protein–RNA pairs in 199.7 ms