Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 AL158047.1-201ENST00000445918 881 ntBASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 AC008403.3-201ENST00000598924 454 ntBASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 AC139713.2-201ENST00000641328 2723 ntBASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.93■□□□□ 0.46
PPP4R4Q6NUP7 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 AC008764.6-201ENST00000595909 2069 ntBASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 PRORSD1P-202ENST00000563365 2154 ntBASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 FAM197Y4-202ENST00000622692 608 ntBASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 AC124283.5-201ENST00000624661 1809 ntBASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 OR6D1P-202ENST00000641007 5290 ntBASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PPP4R4Q6NUP7 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PPP4R4Q6NUP7 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms