Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP39Q53GS9 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP39Q53GS9 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP39Q53GS9 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP39Q53GS9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.99■□□□□ 0.63
USP39Q53GS9 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.99■□□□□ 0.63
USP39Q53GS9 TSPY21P-201ENST00000433481 731 ntBASIC18.99■□□□□ 0.63
USP39Q53GS9 TSPY23P-201ENST00000440136 739 ntBASIC18.99■□□□□ 0.63
USP39Q53GS9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.99■□□□□ 0.63
USP39Q53GS9 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.99■□□□□ 0.63
USP39Q53GS9 AC111152.3-201ENST00000569699 673 ntBASIC18.99■□□□□ 0.63
USP39Q53GS9 RN7SL510P-201ENST00000581311 263 ntBASIC18.99■□□□□ 0.63
USP39Q53GS9 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.99■□□□□ 0.63
USP39Q53GS9 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP39Q53GS9 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP39Q53GS9 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP39Q53GS9 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
USP39Q53GS9 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP39Q53GS9 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP39Q53GS9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
USP39Q53GS9 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP39Q53GS9 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.98■□□□□ 0.63
USP39Q53GS9 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
USP39Q53GS9 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP39Q53GS9 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP39Q53GS9 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.98■□□□□ 0.63
USP39Q53GS9 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP39Q53GS9 AC004870.1-201ENST00000315132 882 ntBASIC18.98■□□□□ 0.63
USP39Q53GS9 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.98■□□□□ 0.63
USP39Q53GS9 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.98■□□□□ 0.63
USP39Q53GS9 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
USP39Q53GS9 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.98■□□□□ 0.63
USP39Q53GS9 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.98■□□□□ 0.63
USP39Q53GS9 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.98■□□□□ 0.63
USP39Q53GS9 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
USP39Q53GS9 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.98■□□□□ 0.63
USP39Q53GS9 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
USP39Q53GS9 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP39Q53GS9 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP39Q53GS9 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP39Q53GS9 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP39Q53GS9 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP39Q53GS9 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
USP39Q53GS9 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.97■□□□□ 0.63
USP39Q53GS9 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 AC087289.5-201ENST00000586076 3175 ntBASIC18.97■□□□□ 0.63
USP39Q53GS9 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.97■□□□□ 0.63
USP39Q53GS9 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
USP39Q53GS9 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.97■□□□□ 0.63
USP39Q53GS9 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.97■□□□□ 0.63
USP39Q53GS9 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 AC024243.1-201ENST00000609234 778 ntBASIC18.97■□□□□ 0.63
USP39Q53GS9 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.97■□□□□ 0.63
USP39Q53GS9 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
USP39Q53GS9 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
USP39Q53GS9 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
USP39Q53GS9 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP39Q53GS9 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP39Q53GS9 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP39Q53GS9 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP39Q53GS9 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.96■□□□□ 0.63
USP39Q53GS9 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
USP39Q53GS9 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.96■□□□□ 0.63
USP39Q53GS9 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.96■□□□□ 0.63
USP39Q53GS9 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP39Q53GS9 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP39Q53GS9 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP39Q53GS9 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
USP39Q53GS9 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.96■□□□□ 0.63
USP39Q53GS9 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP39Q53GS9 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.96■□□□□ 0.63
USP39Q53GS9 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.96■□□□□ 0.63
USP39Q53GS9 BX323043.1-201ENST00000641006 1765 ntBASIC18.96■□□□□ 0.63
USP39Q53GS9 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP39Q53GS9 AC018445.3-201ENST00000624177 1945 ntBASIC18.96■□□□□ 0.63
USP39Q53GS9 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
USP39Q53GS9 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP39Q53GS9 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP39Q53GS9 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 AC016734.2-201ENST00000624325 1377 ntBASIC18.95■□□□□ 0.62
USP39Q53GS9 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP39Q53GS9 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms