Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.98■□□□□ 0.95
TPM4P67936 AC091874.3-201ENST00000512672 1195 ntBASIC20.98■□□□□ 0.95
TPM4P67936 AC080038.1-201ENST00000611274 1154 ntBASIC20.98■□□□□ 0.95
TPM4P67936 AC092118.2-201ENST00000613495 667 ntBASIC20.98■□□□□ 0.95
TPM4P67936 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TPM4P67936 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TPM4P67936 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.98■□□□□ 0.95
TPM4P67936 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.98■□□□□ 0.95
TPM4P67936 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TPM4P67936 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
TPM4P67936 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.97■□□□□ 0.95
TPM4P67936 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
TPM4P67936 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.97■□□□□ 0.95
TPM4P67936 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.97■□□□□ 0.95
TPM4P67936 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
TPM4P67936 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.97■□□□□ 0.95
TPM4P67936 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.97■□□□□ 0.95
TPM4P67936 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.97■□□□□ 0.95
TPM4P67936 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.97■□□□□ 0.95
TPM4P67936 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.97■□□□□ 0.95
TPM4P67936 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.97■□□□□ 0.95
TPM4P67936 AL050303.2-201ENST00000619798 666 ntBASIC20.97■□□□□ 0.95
TPM4P67936 HLA-B-256ENST00000639848 1089 ntBASIC20.97■□□□□ 0.95
TPM4P67936 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.97■□□□□ 0.95
TPM4P67936 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
TPM4P67936 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM4P67936 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
TPM4P67936 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TPM4P67936 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.96■□□□□ 0.95
TPM4P67936 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
TPM4P67936 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TPM4P67936 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TPM4P67936 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
TPM4P67936 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TPM4P67936 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TPM4P67936 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.96■□□□□ 0.95
TPM4P67936 MIR663A-201ENST00000385250 93 ntBASIC20.96■□□□□ 0.95
TPM4P67936 TSPY23P-201ENST00000440136 739 ntBASIC20.96■□□□□ 0.95
TPM4P67936 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.96■□□□□ 0.95
TPM4P67936 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.96■□□□□ 0.95
TPM4P67936 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.96■□□□□ 0.95
TPM4P67936 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.96■□□□□ 0.95
TPM4P67936 AL160286.2-201ENST00000567150 934 ntBASIC20.96■□□□□ 0.95
TPM4P67936 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.96■□□□□ 0.95
TPM4P67936 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.96■□□□□ 0.95
TPM4P67936 MYC-208ENST00000641036 567 ntBASIC20.96■□□□□ 0.95
TPM4P67936 AC073111.5-205ENST00000641717 521 ntBASIC20.96■□□□□ 0.95
TPM4P67936 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
TPM4P67936 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
TPM4P67936 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TPM4P67936 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TPM4P67936 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
TPM4P67936 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TPM4P67936 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TPM4P67936 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.96■□□□□ 0.95
TPM4P67936 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
TPM4P67936 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.96■□□□□ 0.95
TPM4P67936 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TPM4P67936 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TPM4P67936 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
TPM4P67936 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
TPM4P67936 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.95■□□□□ 0.94
TPM4P67936 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TPM4P67936 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TPM4P67936 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.95■□□□□ 0.94
TPM4P67936 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TPM4P67936 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
TPM4P67936 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
TPM4P67936 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TPM4P67936 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.95■□□□□ 0.94
TPM4P67936 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.95■□□□□ 0.94
TPM4P67936 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.95■□□□□ 0.94
TPM4P67936 AC120498.8-201ENST00000614275 531 ntBASIC20.95■□□□□ 0.94
TPM4P67936 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TPM4P67936 AP000997.3-201ENST00000623333 2250 ntBASIC20.95■□□□□ 0.94
TPM4P67936 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
TPM4P67936 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TPM4P67936 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms