Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.16■□□□□ 0.5
PDX1P52945 AL645929.1-201ENST00000420084 975 ntBASIC18.16■□□□□ 0.5
PDX1P52945 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PDX1P52945 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.16■□□□□ 0.5
PDX1P52945 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.16■□□□□ 0.5
PDX1P52945 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.16■□□□□ 0.5
PDX1P52945 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.16■□□□□ 0.5
PDX1P52945 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
PDX1P52945 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PDX1P52945 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PDX1P52945 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PDX1P52945 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.16■□□□□ 0.5
PDX1P52945 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PDX1P52945 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.16■□□□□ 0.5
PDX1P52945 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PDX1P52945 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PDX1P52945 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PDX1P52945 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PDX1P52945 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
PDX1P52945 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PDX1P52945 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.15■□□□□ 0.5
PDX1P52945 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
PDX1P52945 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
PDX1P52945 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 TSPY21P-201ENST00000433481 731 ntBASIC18.15■□□□□ 0.5
PDX1P52945 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
PDX1P52945 AC092119.3-201ENST00000612618 583 ntBASIC18.15■□□□□ 0.5
PDX1P52945 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.15■□□□□ 0.5
PDX1P52945 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.15■□□□□ 0.5
PDX1P52945 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.15■□□□□ 0.5
PDX1P52945 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.15■□□□□ 0.5
PDX1P52945 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
PDX1P52945 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.15■□□□□ 0.5
PDX1P52945 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PDX1P52945 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PDX1P52945 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PDX1P52945 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 AC036111.1-201ENST00000533973 1582 ntBASIC18.14■□□□□ 0.49
PDX1P52945 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.14■□□□□ 0.49
PDX1P52945 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.14■□□□□ 0.49
PDX1P52945 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.14■□□□□ 0.49
PDX1P52945 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.14■□□□□ 0.49
PDX1P52945 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.14■□□□□ 0.49
PDX1P52945 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.14■□□□□ 0.49
PDX1P52945 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.14■□□□□ 0.49
PDX1P52945 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.14■□□□□ 0.49
PDX1P52945 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
PDX1P52945 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDX1P52945 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDX1P52945 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDX1P52945 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDX1P52945 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDX1P52945 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDX1P52945 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDX1P52945 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDX1P52945 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
PDX1P52945 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDX1P52945 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.13■□□□□ 0.49
PDX1P52945 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.13■□□□□ 0.49
PDX1P52945 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.13■□□□□ 0.49
PDX1P52945 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.13■□□□□ 0.49
PDX1P52945 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.13■□□□□ 0.49
PDX1P52945 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.13■□□□□ 0.49
PDX1P52945 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.13■□□□□ 0.49
PDX1P52945 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.13■□□□□ 0.49
PDX1P52945 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.13■□□□□ 0.49
PDX1P52945 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDX1P52945 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDX1P52945 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.13■□□□□ 0.49
PDX1P52945 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
PDX1P52945 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDX1P52945 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.13■□□□□ 0.49
PDX1P52945 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms