Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC8.34□□□□□ -1.07
USH2AO75445 MIR3180-5-201ENST00000583743 153 ntBASIC8.34□□□□□ -1.07
USH2AO75445 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
USH2AO75445 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
USH2AO75445 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
USH2AO75445 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.07
USH2AO75445 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
USH2AO75445 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
USH2AO75445 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC8.34□□□□□ -1.08
USH2AO75445 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.08
USH2AO75445 ELK2BP-201ENST00000415014 1224 ntBASIC8.34□□□□□ -1.08
USH2AO75445 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC8.34□□□□□ -1.08
USH2AO75445 STK25-234ENST00000535007 2459 ntTSL 2 BASIC8.34□□□□□ -1.08
USH2AO75445 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
USH2AO75445 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC8.33□□□□□ -1.08
USH2AO75445 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC8.33□□□□□ -1.08
USH2AO75445 AC108751.1-201ENST00000490852 363 ntBASIC8.33□□□□□ -1.08
USH2AO75445 GUSBP12-201ENST00000513727 720 ntBASIC8.33□□□□□ -1.08
USH2AO75445 LSM12-202ENST00000585388 942 ntTSL 3 BASIC8.33□□□□□ -1.08
USH2AO75445 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 TP73-AS1-210ENST00000637775 1455 ntBASIC8.33□□□□□ -1.08
USH2AO75445 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 AC121338.2-201ENST00000622535 1744 ntBASIC8.33□□□□□ -1.08
USH2AO75445 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 KRT18P27-201ENST00000427733 1299 ntBASIC8.33□□□□□ -1.08
USH2AO75445 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC8.33□□□□□ -1.08
USH2AO75445 MCCD1P1-208ENST00000445732 328 ntBASIC8.33□□□□□ -1.08
USH2AO75445 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC8.33□□□□□ -1.08
USH2AO75445 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC8.33□□□□□ -1.08
USH2AO75445 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
USH2AO75445 EP400NL-214ENST00000641289 2402 ntBASIC8.33□□□□□ -1.08
USH2AO75445 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 HLA-J-201ENST00000462773 1622 ntBASIC8.33□□□□□ -1.08
USH2AO75445 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
USH2AO75445 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC8.33□□□□□ -1.08
USH2AO75445 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC8.33□□□□□ -1.08
USH2AO75445 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
USH2AO75445 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 AC004817.3-201ENST00000602957 2129 ntBASIC8.33□□□□□ -1.08
USH2AO75445 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC8.33□□□□□ -1.08
USH2AO75445 RNA5SP416-201ENST00000516838 111 ntBASIC8.33□□□□□ -1.08
USH2AO75445 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 MTDHP3-201ENST00000594186 672 ntBASIC8.33□□□□□ -1.08
USH2AO75445 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC8.33□□□□□ -1.08
USH2AO75445 AL390955.2-201ENST00000603032 514 ntBASIC8.33□□□□□ -1.08
USH2AO75445 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC8.33□□□□□ -1.08
USH2AO75445 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
USH2AO75445 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
USH2AO75445 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC8.32□□□□□ -1.08
USH2AO75445 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC8.32□□□□□ -1.08
USH2AO75445 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
USH2AO75445 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC8.32□□□□□ -1.08
USH2AO75445 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC8.32□□□□□ -1.08
USH2AO75445 AC024563.2-201ENST00000603282 481 ntBASIC8.32□□□□□ -1.08
USH2AO75445 AL513190.1-201ENST00000621254 727 ntBASIC8.32□□□□□ -1.08
USH2AO75445 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
USH2AO75445 AP005117.1-201ENST00000584346 1413 ntBASIC8.32□□□□□ -1.08
USH2AO75445 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC8.32□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms