Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC15.08■□□□□ 0.01
HMGB3O15347 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGB3O15347 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGB3O15347 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC15.08■□□□□ 0.01
HMGB3O15347 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC15.08■□□□□ 0.01
HMGB3O15347 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGB3O15347 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC15.08■□□□□ 0.01
HMGB3O15347 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB3O15347 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC15.08■□□□□ 0
HMGB3O15347 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGB3O15347 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB3O15347 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB3O15347 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB3O15347 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB3O15347 UBE2DNL-204ENST00000602536 740 ntBASIC15.08■□□□□ 0
HMGB3O15347 AL591742.1-201ENST00000604433 565 ntBASIC15.08■□□□□ 0
HMGB3O15347 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
HMGB3O15347 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC15.08■□□□□ 0
HMGB3O15347 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
HMGB3O15347 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB3O15347 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGB3O15347 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC15.08■□□□□ 0
HMGB3O15347 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC15.08■□□□□ 0
HMGB3O15347 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.08■□□□□ 0
HMGB3O15347 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB3O15347 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC15.08■□□□□ 0
HMGB3O15347 GAS2L1P2-201ENST00000436355 1356 ntBASIC15.08■□□□□ 0
HMGB3O15347 AC008406.3-201ENST00000620001 1374 ntBASIC15.08■□□□□ 0
HMGB3O15347 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.08■□□□□ 0
HMGB3O15347 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB3O15347 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.08■□□□□ 0
HMGB3O15347 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB3O15347 MADD-208ENST00000405573 1823 ntTSL 5 BASIC15.08■□□□□ 0
HMGB3O15347 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC15.08■□□□□ 0
HMGB3O15347 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB3O15347 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB3O15347 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC15.07■□□□□ 0
HMGB3O15347 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC15.07■□□□□ 0
HMGB3O15347 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
HMGB3O15347 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC15.07■□□□□ 0
HMGB3O15347 ZNF815P-204ENST00000434898 1737 ntBASIC15.07■□□□□ 0
HMGB3O15347 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.07■□□□□ 0
HMGB3O15347 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
HMGB3O15347 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC15.07■□□□□ 0
HMGB3O15347 AC027612.3-201ENST00000413684 1047 ntBASIC15.07■□□□□ 0
HMGB3O15347 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC15.07■□□□□ 0
HMGB3O15347 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC15.07■□□□□ 0
HMGB3O15347 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC15.07■□□□□ 0
HMGB3O15347 AC016405.3-201ENST00000607710 860 ntBASIC15.07■□□□□ 0
HMGB3O15347 AC131212.1-201ENST00000613771 668 ntBASIC15.07■□□□□ 0
HMGB3O15347 AC110285.6-201ENST00000617652 491 ntBASIC15.07■□□□□ 0
HMGB3O15347 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC15.07■□□□□ 0
HMGB3O15347 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC15.07■□□□□ 0
HMGB3O15347 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
HMGB3O15347 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
HMGB3O15347 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
HMGB3O15347 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB3O15347 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
HMGB3O15347 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
HMGB3O15347 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
HMGB3O15347 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC15.06■□□□□ 0
HMGB3O15347 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC15.06■□□□□ 0
HMGB3O15347 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC15.06■□□□□ 0
HMGB3O15347 AC018553.1-201ENST00000616682 1458 ntBASIC15.06■□□□□ 0
HMGB3O15347 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB3O15347 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
HMGB3O15347 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms