Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LHX3Q9UBR4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.89■□□□□ 0.61
LHX3Q9UBR4 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.89■□□□□ 0.61
LHX3Q9UBR4 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 CROCCP3-202ENST00000420820 1947 ntBASIC18.88■□□□□ 0.61
LHX3Q9UBR4 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 TSPY5P-201ENST00000426936 936 ntBASIC18.88■□□□□ 0.61
LHX3Q9UBR4 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 AC063952.2-201ENST00000498792 1227 ntBASIC18.88■□□□□ 0.61
LHX3Q9UBR4 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
LHX3Q9UBR4 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 AL049597.2-201ENST00000565575 961 ntBASIC18.87■□□□□ 0.61
LHX3Q9UBR4 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LHX3Q9UBR4 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 KRT18P41-201ENST00000518924 1277 ntBASIC18.86■□□□□ 0.61
LHX3Q9UBR4 AC022616.7-201ENST00000525383 220 ntBASIC18.86■□□□□ 0.61
LHX3Q9UBR4 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 AL031598.1-201ENST00000561511 1773 ntBASIC18.86■□□□□ 0.61
LHX3Q9UBR4 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LHX3Q9UBR4 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 KRT8P7-201ENST00000533003 1432 ntBASIC18.85■□□□□ 0.61
LHX3Q9UBR4 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms