Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 ATP5G1P1-201ENST00000448724 379 ntBASIC17.74■□□□□ 0.43
SCN3AQ9NY46 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 Z98044.1-201ENST00000632503 1764 ntBASIC17.73■□□□□ 0.43
SCN3AQ9NY46 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 AL023284.2-201ENST00000405850 579 ntBASIC17.73■□□□□ 0.43
SCN3AQ9NY46 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 AL049597.2-201ENST00000565575 961 ntBASIC17.73■□□□□ 0.43
SCN3AQ9NY46 AL138966.2-201ENST00000621997 464 ntBASIC17.73■□□□□ 0.43
SCN3AQ9NY46 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SCN3AQ9NY46 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.72■□□□□ 0.43
SCN3AQ9NY46 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 MCCD1P1-208ENST00000445732 328 ntBASIC17.72■□□□□ 0.43
SCN3AQ9NY46 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 MIR3180-5-201ENST00000583743 153 ntBASIC17.72■□□□□ 0.43
SCN3AQ9NY46 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 AC083849.1-201ENST00000615227 514 ntBASIC17.72■□□□□ 0.43
SCN3AQ9NY46 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 MIR4674-201ENST00000582457 87 ntBASIC17.72■□□□□ 0.43
SCN3AQ9NY46 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 AIRN-201ENST00000601203 4374 ntBASIC17.72■□□□□ 0.43
SCN3AQ9NY46 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SCN3AQ9NY46 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 NEK4P2-201ENST00000580004 1012 ntBASIC17.71■□□□□ 0.43
SCN3AQ9NY46 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN3AQ9NY46 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms