Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 TSPY23P-201ENST00000440136 739 ntBASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 KRT8P41-201ENST00000533985 1514 ntBASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 AC099398.1-201ENST00000567919 2776 ntBASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP4Q8N3C7 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 AL031598.1-201ENST00000561511 1773 ntBASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 TSPY21P-201ENST00000433481 731 ntBASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 AC133681.1-201ENST00000465482 601 ntBASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 MIR4651-201ENST00000582622 73 ntBASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CLIP4Q8N3C7 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 CD99P1-205ENST00000527459 561 ntBASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 AC110285.5-201ENST00000611501 352 ntBASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 AL512353.2-201ENST00000448759 1962 ntBASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 AC139713.2-201ENST00000641328 2723 ntBASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP4Q8N3C7 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 AC093525.10-201ENST00000625130 1569 ntBASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 AC128676.1-201ENST00000454392 318 ntBASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms