Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
BEST3Q8N1M1 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
BEST3Q8N1M1 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 AL358472.4-201ENST00000633140 710 ntBASIC17.39■□□□□ 0.37
BEST3Q8N1M1 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BEST3Q8N1M1 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 AC098818.2-201ENST00000564925 2320 ntBASIC17.38■□□□□ 0.37
BEST3Q8N1M1 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 KRT18P38-201ENST00000449496 1282 ntBASIC17.38■□□□□ 0.37
BEST3Q8N1M1 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 GCSHP2-201ENST00000560971 527 ntBASIC17.38■□□□□ 0.37
BEST3Q8N1M1 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 TEX21P-204ENST00000641479 1693 ntBASIC17.38■□□□□ 0.37
BEST3Q8N1M1 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BEST3Q8N1M1 AL158211.5-201ENST00000623583 2518 ntBASIC17.38■□□□□ 0.37
BEST3Q8N1M1 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 AL023284.2-201ENST00000405850 579 ntBASIC17.37■□□□□ 0.37
BEST3Q8N1M1 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 AL671277.2-201ENST00000458060 996 ntBASIC17.37■□□□□ 0.37
BEST3Q8N1M1 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
BEST3Q8N1M1 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 AC036111.1-201ENST00000533973 1582 ntBASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms