Protein–RNA interactions for Protein: Q7KZF4

SND1, Staphylococcal nuclease domain-containing protein 1, humanhuman

Known RBP eCLIP

Length 910 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SND1Q7KZF4 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC26.02■■□□□ 1.764e-9■■□□□ 11.7
SND1Q7KZF4 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC26.02■■□□□ 1.764e-9■■□□□ 11.7
SND1Q7KZF4 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC26.02■■□□□ 1.764e-9■■□□□ 11.7
SND1Q7KZF4 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.664e-9■■□□□ 11.7
SND1Q7KZF4 ITGA5-204ENST00000547744 547 ntTSL 417.69■□□□□ 0.421e-6■■□□□ 11.7
SND1Q7KZF4 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.98e-7■■□□□ 11.7
SND1Q7KZF4 LRIG2-203ENST00000466161 3366 ntTSL 27.67□□□□□ -1.188e-7■■□□□ 11.7
SND1Q7KZF4 LRIG2-205ENST00000492207 5076 ntTSL 57.3□□□□□ -1.248e-7■■□□□ 11.7
SND1Q7KZF4 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC16.43■□□□□ 0.221e-6■■□□□ 11.7
SND1Q7KZF4 PIGG-208ENST00000504346 3019 ntTSL 2 BASIC14.53□□□□□ -0.081e-6■■□□□ 11.7
SND1Q7KZF4 PIGG-203ENST00000453061 3218 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.181e-6■■□□□ 11.7
SND1Q7KZF4 PIGG-201ENST00000310340 3203 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.211e-6■■□□□ 11.7
SND1Q7KZF4 TMEM50A-204ENST00000487234 511 ntTSL 36.3□□□□□ -1.49e-8■■□□□ 11.7
SND1Q7KZF4 FADS1-213ENST00000539999 405 ntTSL 37.13□□□□□ -1.272e-19■■□□□ 11.7
SND1Q7KZF4 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.121e-6■■□□□ 11.7
SND1Q7KZF4 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.031e-6■■□□□ 11.7
SND1Q7KZF4 FLNA-206ENST00000420627 8225 ntTSL 514.47□□□□□ -0.091e-6■■□□□ 11.7
SND1Q7KZF4 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.131e-6■■□□□ 11.7
SND1Q7KZF4 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.191e-6■■□□□ 11.7
SND1Q7KZF4 FLNA-202ENST00000360319 8281 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.281e-6■■□□□ 11.7
SND1Q7KZF4 FLNA-219ENST00000610817 7595 ntTSL 5 BASIC13.05□□□□□ -0.321e-6■■□□□ 11.7
SND1Q7KZF4 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.367e-15■■□□□ 11.7
SND1Q7KZF4 ARPC5-203ENST00000367534 622 ntTSL 3 BASIC13.44□□□□□ -0.267e-15■■□□□ 11.7
SND1Q7KZF4 ARPC5-202ENST00000359856 7209 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.337e-15■■□□□ 11.7
SND1Q7KZF4 ARPC5-204ENST00000462965 2455 ntTSL 26.47□□□□□ -1.377e-15■■□□□ 11.7
SND1Q7KZF4 CAPNS1-212ENST00000591041 812 ntTSL 323.68■■□□□ 1.383e-7■■□□□ 11.7
SND1Q7KZF4 PTK7-209ENST00000470471 854 ntTSL 211.34□□□□□ -0.594e-7■■□□□ 11.7
SND1Q7KZF4 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.45e-10■■□□□ 11.7
SND1Q7KZF4 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.015e-10■■□□□ 11.7
SND1Q7KZF4 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC14.88□□□□□ -0.035e-10■■□□□ 11.7
SND1Q7KZF4 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.075e-10■■□□□ 11.7
SND1Q7KZF4 RRBP1-203ENST00000377807 3792 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.245e-10■■□□□ 11.7
SND1Q7KZF4 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.312e-7■■□□□ 11.7
SND1Q7KZF4 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.542e-7■■□□□ 11.7
SND1Q7KZF4 GAA-209ENST00000577106 812 ntTSL 315.55■□□□□ 0.084e-8■■□□□ 11.7
SND1Q7KZF4 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.197e-7■■□□□ 11.7
SND1Q7KZF4 TMC6-213ENST00000589933 580 ntTSL 321.77■■□□□ 1.088e-10■■□□□ 11.7
SND1Q7KZF4 HMBS-212ENST00000542044 1544 ntTSL 520.37■□□□□ 0.857e-7■■□□□ 11.7
SND1Q7KZF4 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.21■□□□□ 0.837e-7■■□□□ 11.7
SND1Q7KZF4 CISD2-203ENST00000574446 471 ntTSL 519.82■□□□□ 0.761e-6■■□□□ 11.7
SND1Q7KZF4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.37■□□□□ 0.697e-7■■□□□ 11.7
SND1Q7KZF4 HMBS-226ENST00000640813 1283 ntTSL 519.3■□□□□ 0.687e-7■■□□□ 11.7
SND1Q7KZF4 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.611e-6■■□□□ 11.7
SND1Q7KZF4 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.18■□□□□ 0.57e-7■■□□□ 11.7
SND1Q7KZF4 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.06■□□□□ 0.327e-7■■□□□ 11.7
SND1Q7KZF4 HMBS-224ENST00000546226 2112 ntTSL 216.93■□□□□ 0.37e-7■■□□□ 11.7
SND1Q7KZF4 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC14.5□□□□□ -0.097e-7■■□□□ 11.7
SND1Q7KZF4 HMBS-219ENST00000544182 1542 ntTSL 214.14□□□□□ -0.157e-7■■□□□ 11.7
SND1Q7KZF4 CISD2-202ENST00000503643 808 ntTSL 2 BASIC13.68□□□□□ -0.221e-6■■□□□ 11.7
SND1Q7KZF4 HMBS-202ENST00000392841 1411 ntTSL 1 (best) BASIC13.22□□□□□ -0.297e-7■■□□□ 11.7
SND1Q7KZF4 HMBS-217ENST00000543543 1796 ntTSL 511.44□□□□□ -0.587e-7■■□□□ 11.7
SND1Q7KZF4 HMBS-210ENST00000539045 845 ntTSL 210.34□□□□□ -0.757e-7■■□□□ 11.7
SND1Q7KZF4 COPA-202ENST00000368069 4664 ntTSL 1 (best) BASIC13.01□□□□□ -0.337e-7■■□□□ 11.7
SND1Q7KZF4 COPA-201ENST00000241704 4789 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.477e-7■■□□□ 11.7
SND1Q7KZF4 ALG3-204ENST00000423996 904 ntTSL 221.79■■□□□ 1.081e-6■■□□□ 11.7
SND1Q7KZF4 C1GALT1-203ENST00000419721 591 ntTSL 321.63■■□□□ 1.056e-8■■□□□ 11.7
SND1Q7KZF4 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.88■□□□□ 0.936e-8■■□□□ 11.7
SND1Q7KZF4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.07■□□□□ 0.646e-8■■□□□ 11.7
SND1Q7KZF4 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.8■□□□□ 0.66e-8■■□□□ 11.7
SND1Q7KZF4 TSPAN3-204ENST00000558394 550 ntTSL 418.53■□□□□ 0.566e-8■■□□□ 11.7
SND1Q7KZF4 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.45■□□□□ 0.546e-8■■□□□ 11.7
SND1Q7KZF4 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.33■□□□□ 0.526e-8■■□□□ 11.7
SND1Q7KZF4 MMP11-213ENST00000493132 559 ntTSL 214.49□□□□□ -0.096e-8■■□□□ 11.7
SND1Q7KZF4 GGT1-227ENST00000490087 538 ntTSL 514.36□□□□□ -0.116e-8■■□□□ 11.7
SND1Q7KZF4 C1GALT1-205ENST00000436587 6235 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.186e-8■■□□□ 11.7
SND1Q7KZF4 C1GALT1-204ENST00000429911 802 ntTSL 512.37□□□□□ -0.436e-8■■□□□ 11.7
SND1Q7KZF4 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.956e-8■■□□□ 11.7
SND1Q7KZF4 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC6.95□□□□□ -1.36e-8■■□□□ 11.7
SND1Q7KZF4 AC010132.3-202ENST00000433579 1231 ntAPPRIS ALT2 TSL 223.66■■□□□ 1.382e-6■■□□□ 11.7
SND1Q7KZF4 PSMA2-201ENST00000223321 1487 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.622e-6■■□□□ 11.7
SND1Q7KZF4 PSMA2-203ENST00000436986 1453 ntTSL 310.05□□□□□ -0.82e-6■■□□□ 11.7
SND1Q7KZF4 PSMA2-205ENST00000457444 801 ntTSL 38.61□□□□□ -1.032e-6■■□□□ 11.7
SND1Q7KZF4 PSMA2-204ENST00000445517 683 ntTSL 2 BASIC8.57□□□□□ -1.042e-6■■□□□ 11.7
SND1Q7KZF4 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.3□□□□□ -1.562e-6■■□□□ 11.7
SND1Q7KZF4 G3BP1-207ENST00000520006 754 ntTSL 522.19■■□□□ 1.142e-10■■□□□ 11.7
SND1Q7KZF4 G3BP1-209ENST00000520578 530 ntTSL 315.98■□□□□ 0.152e-10■■□□□ 11.7
SND1Q7KZF4 G3BP1-213ENST00000523519 535 ntTSL 415.52■□□□□ 0.082e-10■■□□□ 11.7
SND1Q7KZF4 G3BP1-206ENST00000519832 1173 ntTSL 1 (best)11.13□□□□□ -0.632e-10■■□□□ 11.7
SND1Q7KZF4 PCOLCE-203ENST00000462260 554 ntTSL 214.12□□□□□ -0.152e-7■■□□□ 11.7
SND1Q7KZF4 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.18■□□□□ 0.026e-6■■□□□ 11.7
SND1Q7KZF4 DEGS1-205ENST00000498813 358 ntTSL 26.25□□□□□ -1.412e-6■■□□□ 11.7
SND1Q7KZF4 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.732e-6■■□□□ 11.6
SND1Q7KZF4 LGALS1-204ENST00000464120 303 ntTSL 213.69□□□□□ -0.221e-7■■□□□ 11.6
SND1Q7KZF4 LGALS1-206ENST00000480207 185 ntTSL 58.9□□□□□ -0.981e-7■■□□□ 11.6
SND1Q7KZF4 FBLN1-213ENST00000455233 671 ntTSL 318.82■□□□□ 0.61e-9■■□□□ 11.6
SND1Q7KZF4 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.221e-10■■□□□ 11.6
SND1Q7KZF4 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.8■□□□□ 0.61e-10■■□□□ 11.6
SND1Q7KZF4 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.83■□□□□ 0.281e-10■■□□□ 11.6
SND1Q7KZF4 UBC-213ENST00000546120 718 ntTSL 5 BASIC11.36□□□□□ -0.591e-10■■□□□ 11.6
SND1Q7KZF4 UQCRC2-201ENST00000268379 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.568e-7■■□□□ 11.6
SND1Q7KZF4 UQCRC2-202ENST00000561553 1415 ntTSL 5 BASIC8.35□□□□□ -1.078e-7■■□□□ 11.6
SND1Q7KZF4 UQCRC2-205ENST00000563898 1406 ntTSL 56.92□□□□□ -1.38e-7■■□□□ 11.6
SND1Q7KZF4 PSMB1-201ENST00000262193 928 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.576e-9■■□□□ 11.6
SND1Q7KZF4 PSMB1-202ENST00000462957 1939 ntTSL 25.62□□□□□ -1.516e-9■■□□□ 11.6
SND1Q7KZF4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.14■□□□□ 0.332e-7■■□□□ 11.6
SND1Q7KZF4 ROR2-205ENST00000495386 664 ntTSL 314.35□□□□□ -0.112e-7■■□□□ 11.6
SND1Q7KZF4 ROR2-206ENST00000546883 501 ntTSL 313.53□□□□□ -0.242e-7■■□□□ 11.6
SND1Q7KZF4 ROR2-201ENST00000375708 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.312e-7■■□□□ 11.6
SND1Q7KZF4 SLC25A3-209ENST00000548046 550 ntTSL 414.63□□□□□ -0.073e-6■■□□□ 11.6
SND1Q7KZF4 SLC25A3-213ENST00000550695 756 ntTSL 314.25□□□□□ -0.133e-6■■□□□ 11.6
Retrieved 100 of 13,567 protein–RNA pairs in 61.7 ms