Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
USP43Q70EL4 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.06■□□□□ 0.32
USP43Q70EL4 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.06■□□□□ 0.32
USP43Q70EL4 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
USP43Q70EL4 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 PRORSD1P-201ENST00000295112 541 ntBASIC17.06■□□□□ 0.32
USP43Q70EL4 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.06■□□□□ 0.32
USP43Q70EL4 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.06■□□□□ 0.32
USP43Q70EL4 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.06■□□□□ 0.32
USP43Q70EL4 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.06■□□□□ 0.32
USP43Q70EL4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.06■□□□□ 0.32
USP43Q70EL4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
USP43Q70EL4 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 ZNF815P-204ENST00000434898 1737 ntBASIC17.06■□□□□ 0.32
USP43Q70EL4 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.06■□□□□ 0.32
USP43Q70EL4 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
USP43Q70EL4 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
USP43Q70EL4 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP43Q70EL4 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.06■□□□□ 0.32
USP43Q70EL4 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
USP43Q70EL4 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.05■□□□□ 0.32
USP43Q70EL4 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.05■□□□□ 0.32
USP43Q70EL4 AC126763.1-201ENST00000552015 2118 ntBASIC17.05■□□□□ 0.32
USP43Q70EL4 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.05■□□□□ 0.32
USP43Q70EL4 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.05■□□□□ 0.32
USP43Q70EL4 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.05■□□□□ 0.32
USP43Q70EL4 AC097658.1-201ENST00000475555 843 ntBASIC17.05■□□□□ 0.32
USP43Q70EL4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
USP43Q70EL4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.05■□□□□ 0.32
USP43Q70EL4 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.05■□□□□ 0.32
USP43Q70EL4 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.05■□□□□ 0.32
USP43Q70EL4 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
USP43Q70EL4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
USP43Q70EL4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.05■□□□□ 0.32
USP43Q70EL4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP43Q70EL4 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP43Q70EL4 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP43Q70EL4 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.04■□□□□ 0.32
USP43Q70EL4 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP43Q70EL4 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
USP43Q70EL4 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.04■□□□□ 0.32
USP43Q70EL4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP43Q70EL4 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP43Q70EL4 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP43Q70EL4 HLA-G-202ENST00000376815 851 ntBASIC17.04■□□□□ 0.32
USP43Q70EL4 HLA-G-203ENST00000376818 1127 ntBASIC17.04■□□□□ 0.32
USP43Q70EL4 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.04■□□□□ 0.32
USP43Q70EL4 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.04■□□□□ 0.32
USP43Q70EL4 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP43Q70EL4 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP43Q70EL4 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP43Q70EL4 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP43Q70EL4 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP43Q70EL4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USP43Q70EL4 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.04■□□□□ 0.32
USP43Q70EL4 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
USP43Q70EL4 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
USP43Q70EL4 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.03■□□□□ 0.32
USP43Q70EL4 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.03■□□□□ 0.32
USP43Q70EL4 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.03■□□□□ 0.32
USP43Q70EL4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.03■□□□□ 0.32
USP43Q70EL4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.03■□□□□ 0.32
USP43Q70EL4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.03■□□□□ 0.32
USP43Q70EL4 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP43Q70EL4 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
USP43Q70EL4 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.03■□□□□ 0.32
USP43Q70EL4 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms