Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 CRAT-202ENST00000393384 973 ntTSL 2 BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 AC007663.1-201ENST00000438948 1240 ntBASIC22.62■■□□□ 1.21
VPS53Q5VIR6 ECEL1P2-202ENST00000465689 757 ntBASIC22.62■■□□□ 1.21
VPS53Q5VIR6 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 EGLN1P1-201ENST00000531623 762 ntBASIC22.62■■□□□ 1.21
VPS53Q5VIR6 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 C2orf69P3-201ENST00000565542 1120 ntBASIC22.62■■□□□ 1.21
VPS53Q5VIR6 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 LINC01568-207ENST00000641790 1380 ntBASIC22.62■■□□□ 1.21
VPS53Q5VIR6 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC22.62■■□□□ 1.21
VPS53Q5VIR6 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 BUB3-202ENST00000368859 667 ntTSL 3 BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 ECEL1P3-201ENST00000427961 737 ntBASIC22.61■■□□□ 1.21
VPS53Q5VIR6 SLC25A1P2-201ENST00000430693 912 ntBASIC22.61■■□□□ 1.21
VPS53Q5VIR6 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 CA15P1-201ENST00000481698 905 ntBASIC22.61■■□□□ 1.21
VPS53Q5VIR6 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 AC097493.4-201ENST00000641197 219 ntBASIC22.61■■□□□ 1.21
VPS53Q5VIR6 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC22.61■■□□□ 1.21
VPS53Q5VIR6 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 AP003041.3-201ENST00000527151 707 ntBASIC22.6■■□□□ 1.21
VPS53Q5VIR6 AL353719.1-201ENST00000566847 864 ntBASIC22.6■■□□□ 1.21
VPS53Q5VIR6 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 AC145285.6-201ENST00000604632 637 ntBASIC22.6■■□□□ 1.21
VPS53Q5VIR6 FAM87A-204ENST00000613235 858 ntBASIC22.6■■□□□ 1.21
VPS53Q5VIR6 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC22.6■■□□□ 1.21
VPS53Q5VIR6 AL512353.2-201ENST00000448759 1962 ntBASIC22.59■■□□□ 1.21
VPS53Q5VIR6 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 GPAT2P1-201ENST00000444924 1672 ntBASIC22.59■■□□□ 1.21
VPS53Q5VIR6 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 DUT-205ENST00000558813 769 ntTSL 2 BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
VPS53Q5VIR6 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms