Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC15.12■□□□□ 0.01
CX3CL1P78423 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
CX3CL1P78423 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CX3CL1P78423 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 KRT8P11-201ENST00000409686 1436 ntBASIC15.12■□□□□ 0.01
CX3CL1P78423 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CX3CL1P78423 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC15.12■□□□□ 0.01
CX3CL1P78423 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC15.12■□□□□ 0.01
CX3CL1P78423 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 AC008040.2-201ENST00000461049 708 ntBASIC15.12■□□□□ 0.01
CX3CL1P78423 AC116562.2-201ENST00000507042 360 ntBASIC15.12■□□□□ 0.01
CX3CL1P78423 AC026471.5-201ENST00000615068 467 ntBASIC15.12■□□□□ 0.01
CX3CL1P78423 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.12■□□□□ 0.01
CX3CL1P78423 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CX3CL1P78423 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CX3CL1P78423 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CX3CL1P78423 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CX3CL1P78423 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC15.12■□□□□ 0.01
CX3CL1P78423 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CX3CL1P78423 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CX3CL1P78423 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC15.11■□□□□ 0.01
CX3CL1P78423 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC15.11■□□□□ 0.01
CX3CL1P78423 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC15.11■□□□□ 0.01
CX3CL1P78423 MESTP1-201ENST00000404287 994 ntBASIC15.11■□□□□ 0.01
CX3CL1P78423 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC15.11■□□□□ 0.01
CX3CL1P78423 FAM207BP-201ENST00000447172 505 ntBASIC15.11■□□□□ 0.01
CX3CL1P78423 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC15.11■□□□□ 0.01
CX3CL1P78423 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CX3CL1P78423 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 PRSS44-201ENST00000515154 1146 ntBASIC15.11■□□□□ 0.01
CX3CL1P78423 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 DET1-205ENST00000558413 583 ntTSL 4 BASIC15.11■□□□□ 0.01
CX3CL1P78423 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC15.11■□□□□ 0.01
CX3CL1P78423 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC15.11■□□□□ 0.01
CX3CL1P78423 DECR2-212ENST00000627716 352 ntTSL 2 BASIC15.11■□□□□ 0.01
CX3CL1P78423 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC15.11■□□□□ 0.01
CX3CL1P78423 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CX3CL1P78423 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CX3CL1P78423 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CX3CL1P78423 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC15.1■□□□□ 0.01
CX3CL1P78423 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC15.1■□□□□ 0.01
CX3CL1P78423 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC15.1■□□□□ 0.01
CX3CL1P78423 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CX3CL1P78423 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
CX3CL1P78423 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC15.1■□□□□ 0.01
CX3CL1P78423 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC15.1■□□□□ 0.01
CX3CL1P78423 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
CX3CL1P78423 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms