Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC01558Q9Y6Z2 AC068473.5-201ENST00000616428 2072 ntBASIC13.24□□□□□ -0.29
LINC01558Q9Y6Z2 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC01558Q9Y6Z2 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC01558Q9Y6Z2 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC13.24□□□□□ -0.29
LINC01558Q9Y6Z2 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LINC01558Q9Y6Z2 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LINC01558Q9Y6Z2 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC01558Q9Y6Z2 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
LINC01558Q9Y6Z2 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
LINC01558Q9Y6Z2 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC01558Q9Y6Z2 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC01558Q9Y6Z2 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LINC01558Q9Y6Z2 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
LINC01558Q9Y6Z2 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LINC01558Q9Y6Z2 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC01558Q9Y6Z2 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC01558Q9Y6Z2 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC01558Q9Y6Z2 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC13.23□□□□□ -0.29
LINC01558Q9Y6Z2 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC01558Q9Y6Z2 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC13.22□□□□□ -0.29
LINC01558Q9Y6Z2 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC01558Q9Y6Z2 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC01558Q9Y6Z2 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC01558Q9Y6Z2 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LINC01558Q9Y6Z2 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC13.22□□□□□ -0.29
LINC01558Q9Y6Z2 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC01558Q9Y6Z2 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC01558Q9Y6Z2 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC01558Q9Y6Z2 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC01558Q9Y6Z2 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
LINC01558Q9Y6Z2 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC01558Q9Y6Z2 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC01558Q9Y6Z2 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC01558Q9Y6Z2 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC01558Q9Y6Z2 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC13.21□□□□□ -0.3
LINC01558Q9Y6Z2 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01558Q9Y6Z2 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
LINC01558Q9Y6Z2 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC01558Q9Y6Z2 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC13.2□□□□□ -0.3
LINC01558Q9Y6Z2 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
LINC01558Q9Y6Z2 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01558Q9Y6Z2 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01558Q9Y6Z2 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01558Q9Y6Z2 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01558Q9Y6Z2 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01558Q9Y6Z2 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LINC01558Q9Y6Z2 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC01558Q9Y6Z2 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC13.18□□□□□ -0.3
LINC01558Q9Y6Z2 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC01558Q9Y6Z2 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC01558Q9Y6Z2 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC01558Q9Y6Z2 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
LINC01558Q9Y6Z2 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC01558Q9Y6Z2 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
LINC01558Q9Y6Z2 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC13.18□□□□□ -0.3
LINC01558Q9Y6Z2 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC01558Q9Y6Z2 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC01558Q9Y6Z2 AL024507.2-201ENST00000606070 2574 ntBASIC13.18□□□□□ -0.3
LINC01558Q9Y6Z2 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC01558Q9Y6Z2 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC01558Q9Y6Z2 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LINC01558Q9Y6Z2 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC01558Q9Y6Z2 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
LINC01558Q9Y6Z2 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC01558Q9Y6Z2 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC01558Q9Y6Z2 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
LINC01558Q9Y6Z2 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC01558Q9Y6Z2 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC01558Q9Y6Z2 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC01558Q9Y6Z2 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC01558Q9Y6Z2 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01558Q9Y6Z2 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01558Q9Y6Z2 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01558Q9Y6Z2 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC13.15□□□□□ -0.3
LINC01558Q9Y6Z2 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC01558Q9Y6Z2 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01558Q9Y6Z2 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01558Q9Y6Z2 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01558Q9Y6Z2 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC01558Q9Y6Z2 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
LINC01558Q9Y6Z2 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01558Q9Y6Z2 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC01558Q9Y6Z2 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
LINC01558Q9Y6Z2 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC13.13□□□□□ -0.31
LINC01558Q9Y6Z2 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
LINC01558Q9Y6Z2 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
LINC01558Q9Y6Z2 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
LINC01558Q9Y6Z2 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01558Q9Y6Z2 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
LINC01558Q9Y6Z2 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01558Q9Y6Z2 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01558Q9Y6Z2 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01558Q9Y6Z2 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01558Q9Y6Z2 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01558Q9Y6Z2 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
LINC01558Q9Y6Z2 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
LINC01558Q9Y6Z2 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01558Q9Y6Z2 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
LINC01558Q9Y6Z2 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms