Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
KDM3AQ9Y4C1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
KDM3AQ9Y4C1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
KDM3AQ9Y4C1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
KDM3AQ9Y4C1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
KDM3AQ9Y4C1 BRD4-212ENST00000630599 726 ntTSL 2 BASIC28.48■■■□□ 2.15
KDM3AQ9Y4C1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
KDM3AQ9Y4C1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
KDM3AQ9Y4C1 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
KDM3AQ9Y4C1 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC28.48■■■□□ 2.15
KDM3AQ9Y4C1 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC28.48■■■□□ 2.15
KDM3AQ9Y4C1 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC28.48■■■□□ 2.15
KDM3AQ9Y4C1 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC28.48■■■□□ 2.15
KDM3AQ9Y4C1 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
KDM3AQ9Y4C1 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC28.47■■■□□ 2.15
KDM3AQ9Y4C1 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC28.46■■■□□ 2.15
KDM3AQ9Y4C1 AC110285.7-201ENST00000624417 1536 ntBASIC28.46■■■□□ 2.15
KDM3AQ9Y4C1 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
KDM3AQ9Y4C1 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
KDM3AQ9Y4C1 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC28.45■■■□□ 2.15
KDM3AQ9Y4C1 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC28.44■■■□□ 2.14
KDM3AQ9Y4C1 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC28.43■■■□□ 2.14
KDM3AQ9Y4C1 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
KDM3AQ9Y4C1 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC28.43■■■□□ 2.14
KDM3AQ9Y4C1 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.43■■■□□ 2.14
KDM3AQ9Y4C1 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC28.43■■■□□ 2.14
KDM3AQ9Y4C1 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
KDM3AQ9Y4C1 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.42■■■□□ 2.14
KDM3AQ9Y4C1 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC28.41■■■□□ 2.14
KDM3AQ9Y4C1 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
KDM3AQ9Y4C1 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
KDM3AQ9Y4C1 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.4■■■□□ 2.14
KDM3AQ9Y4C1 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
KDM3AQ9Y4C1 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.4■■■□□ 2.14
KDM3AQ9Y4C1 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
KDM3AQ9Y4C1 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
KDM3AQ9Y4C1 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.14
KDM3AQ9Y4C1 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
KDM3AQ9Y4C1 PEX7-203ENST00000541292 945 ntTSL 5 BASIC28.39■■■□□ 2.13
KDM3AQ9Y4C1 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC28.39■■■□□ 2.13
KDM3AQ9Y4C1 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC28.38■■■□□ 2.13
KDM3AQ9Y4C1 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
KDM3AQ9Y4C1 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
KDM3AQ9Y4C1 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
KDM3AQ9Y4C1 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
KDM3AQ9Y4C1 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC28.37■■■□□ 2.13
KDM3AQ9Y4C1 AC018358.1-201ENST00000631079 1402 ntBASIC28.37■■■□□ 2.13
KDM3AQ9Y4C1 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC28.36■■■□□ 2.13
KDM3AQ9Y4C1 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
KDM3AQ9Y4C1 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
KDM3AQ9Y4C1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
KDM3AQ9Y4C1 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
KDM3AQ9Y4C1 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
KDM3AQ9Y4C1 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
KDM3AQ9Y4C1 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
KDM3AQ9Y4C1 AC008813.1-201ENST00000536597 885 ntBASIC28.34■■■□□ 2.13
KDM3AQ9Y4C1 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
KDM3AQ9Y4C1 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
KDM3AQ9Y4C1 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
KDM3AQ9Y4C1 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC28.33■■■□□ 2.13
KDM3AQ9Y4C1 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
KDM3AQ9Y4C1 BX255925.1-201ENST00000566954 1854 ntBASIC28.33■■■□□ 2.13
KDM3AQ9Y4C1 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
KDM3AQ9Y4C1 LINC01003-201ENST00000564834 1764 ntBASIC28.32■■■□□ 2.12
KDM3AQ9Y4C1 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
KDM3AQ9Y4C1 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.31■■■□□ 2.12
KDM3AQ9Y4C1 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.31■■■□□ 2.12
KDM3AQ9Y4C1 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
KDM3AQ9Y4C1 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
KDM3AQ9Y4C1 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
KDM3AQ9Y4C1 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
KDM3AQ9Y4C1 TPT1-202ENST00000379055 948 ntTSL 2 BASIC28.29■■■□□ 2.12
KDM3AQ9Y4C1 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
KDM3AQ9Y4C1 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
KDM3AQ9Y4C1 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC28.29■■■□□ 2.12
KDM3AQ9Y4C1 RPS2-210ENST00000530225 765 ntTSL 2 BASIC28.28■■■□□ 2.12
KDM3AQ9Y4C1 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
KDM3AQ9Y4C1 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
KDM3AQ9Y4C1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC28.27■■■□□ 2.12
KDM3AQ9Y4C1 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
KDM3AQ9Y4C1 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC28.27■■■□□ 2.12
KDM3AQ9Y4C1 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
KDM3AQ9Y4C1 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
KDM3AQ9Y4C1 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC28.26■■■□□ 2.11
KDM3AQ9Y4C1 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
KDM3AQ9Y4C1 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC28.26■■■□□ 2.11
KDM3AQ9Y4C1 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC28.26■■■□□ 2.11
KDM3AQ9Y4C1 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
KDM3AQ9Y4C1 GPX1-201ENST00000419349 1106 ntBASIC28.25■■■□□ 2.11
KDM3AQ9Y4C1 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC28.25■■■□□ 2.11
KDM3AQ9Y4C1 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
KDM3AQ9Y4C1 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
KDM3AQ9Y4C1 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
KDM3AQ9Y4C1 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC28.24■■■□□ 2.11
KDM3AQ9Y4C1 RARRES2P2-201ENST00000394842 485 ntBASIC28.24■■■□□ 2.11
KDM3AQ9Y4C1 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
KDM3AQ9Y4C1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC28.24■■■□□ 2.11
KDM3AQ9Y4C1 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
KDM3AQ9Y4C1 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
KDM3AQ9Y4C1 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms