Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
PIF1Q9H611 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.83■■□□□ 1.41
PIF1Q9H611 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
PIF1Q9H611 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
PIF1Q9H611 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.83■■□□□ 1.41
PIF1Q9H611 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
PIF1Q9H611 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.82■■□□□ 1.4
PIF1Q9H611 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PIF1Q9H611 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.82■■□□□ 1.4
PIF1Q9H611 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC23.82■■□□□ 1.4
PIF1Q9H611 MIR762-201ENST00000390236 83 ntBASIC23.82■■□□□ 1.4
PIF1Q9H611 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PIF1Q9H611 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PIF1Q9H611 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PIF1Q9H611 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
PIF1Q9H611 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
PIF1Q9H611 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PIF1Q9H611 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
PIF1Q9H611 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
PIF1Q9H611 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PIF1Q9H611 AC091060.1-201ENST00000623524 1766 ntBASIC23.79■■□□□ 1.4
PIF1Q9H611 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.78■■□□□ 1.4
PIF1Q9H611 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC23.78■■□□□ 1.4
PIF1Q9H611 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PIF1Q9H611 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PIF1Q9H611 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PIF1Q9H611 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PIF1Q9H611 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
PIF1Q9H611 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
PIF1Q9H611 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.77■■□□□ 1.4
PIF1Q9H611 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.77■■□□□ 1.4
PIF1Q9H611 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PIF1Q9H611 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PIF1Q9H611 RPS2-209ENST00000529806 993 ntTSL 3 BASIC23.76■■□□□ 1.39
PIF1Q9H611 HNRNPLP2-201ENST00000568980 1570 ntBASIC23.76■■□□□ 1.39
PIF1Q9H611 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.75■■□□□ 1.39
PIF1Q9H611 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PIF1Q9H611 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
PIF1Q9H611 AC135983.2-203ENST00000454486 1613 ntBASIC23.75■■□□□ 1.39
PIF1Q9H611 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
PIF1Q9H611 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PIF1Q9H611 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PIF1Q9H611 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
PIF1Q9H611 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.74■■□□□ 1.39
PIF1Q9H611 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC23.74■■□□□ 1.39
PIF1Q9H611 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC23.74■■□□□ 1.39
PIF1Q9H611 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
PIF1Q9H611 WHAMMP2-203ENST00000563942 1603 ntBASIC23.73■■□□□ 1.39
PIF1Q9H611 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
PIF1Q9H611 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PIF1Q9H611 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
PIF1Q9H611 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PIF1Q9H611 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.73■■□□□ 1.39
PIF1Q9H611 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.73■■□□□ 1.39
PIF1Q9H611 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PIF1Q9H611 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PIF1Q9H611 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.72■■□□□ 1.39
PIF1Q9H611 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PIF1Q9H611 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PIF1Q9H611 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PIF1Q9H611 AC018358.1-201ENST00000631079 1402 ntBASIC23.71■■□□□ 1.39
PIF1Q9H611 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PIF1Q9H611 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PIF1Q9H611 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.71■■□□□ 1.39
PIF1Q9H611 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.7■■□□□ 1.38
PIF1Q9H611 AP006261.1-201ENST00000584783 668 ntBASIC23.7■■□□□ 1.38
PIF1Q9H611 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.7■■□□□ 1.38
PIF1Q9H611 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
PIF1Q9H611 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PIF1Q9H611 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.69■■□□□ 1.38
PIF1Q9H611 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PIF1Q9H611 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PIF1Q9H611 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PIF1Q9H611 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PIF1Q9H611 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC23.69■■□□□ 1.38
PIF1Q9H611 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PIF1Q9H611 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PIF1Q9H611 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PIF1Q9H611 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PIF1Q9H611 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
PIF1Q9H611 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
PIF1Q9H611 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.68■■□□□ 1.38
PIF1Q9H611 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC23.67■■□□□ 1.38
PIF1Q9H611 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.67■■□□□ 1.38
PIF1Q9H611 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.67■■□□□ 1.38
PIF1Q9H611 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
PIF1Q9H611 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PIF1Q9H611 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
PIF1Q9H611 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PIF1Q9H611 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
PIF1Q9H611 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PIF1Q9H611 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
PIF1Q9H611 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PIF1Q9H611 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.65■■□□□ 1.38
PIF1Q9H611 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.65■■□□□ 1.38
PIF1Q9H611 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.65■■□□□ 1.38
PIF1Q9H611 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
PIF1Q9H611 AC005559.1-201ENST00000589661 871 ntBASIC23.64■■□□□ 1.37
PIF1Q9H611 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PIF1Q9H611 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms