Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.83■■□□□ 1.08
ABCA4P78363 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
ABCA4P78363 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
ABCA4P78363 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
ABCA4P78363 AL592295.1-201ENST00000400984 884 ntBASIC21.82■■□□□ 1.08
ABCA4P78363 AL157400.5-201ENST00000507624 621 ntBASIC21.82■■□□□ 1.08
ABCA4P78363 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ABCA4P78363 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.82■■□□□ 1.08
ABCA4P78363 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
ABCA4P78363 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
ABCA4P78363 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ABCA4P78363 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
ABCA4P78363 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ABCA4P78363 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ABCA4P78363 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
ABCA4P78363 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ABCA4P78363 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.8■■□□□ 1.08
ABCA4P78363 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.79■■□□□ 1.08
ABCA4P78363 ST7-AS1-201ENST00000456775 1889 ntBASIC21.79■■□□□ 1.08
ABCA4P78363 AC019069.1-201ENST00000610008 1333 ntBASIC21.79■■□□□ 1.08
ABCA4P78363 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ABCA4P78363 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ABCA4P78363 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ABCA4P78363 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ABCA4P78363 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
ABCA4P78363 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ABCA4P78363 ECEL1P2-201ENST00000461596 1295 ntBASIC21.77■■□□□ 1.08
ABCA4P78363 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
ABCA4P78363 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ABCA4P78363 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ABCA4P78363 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ABCA4P78363 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ABCA4P78363 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ABCA4P78363 AC129492.7-201ENST00000622992 756 ntBASIC21.76■■□□□ 1.07
ABCA4P78363 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
ABCA4P78363 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ABCA4P78363 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ABCA4P78363 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.76■■□□□ 1.07
ABCA4P78363 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ABCA4P78363 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.76■■□□□ 1.07
ABCA4P78363 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.76■■□□□ 1.07
ABCA4P78363 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ABCA4P78363 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.75■■□□□ 1.07
ABCA4P78363 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.75■■□□□ 1.07
ABCA4P78363 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
ABCA4P78363 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ABCA4P78363 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
ABCA4P78363 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.73■■□□□ 1.07
ABCA4P78363 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.73■■□□□ 1.07
ABCA4P78363 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.72■■□□□ 1.07
ABCA4P78363 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ABCA4P78363 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ABCA4P78363 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
ABCA4P78363 AL451085.2-201ENST00000605085 799 ntBASIC21.71■■□□□ 1.07
ABCA4P78363 AC133552.2-201ENST00000619106 1032 ntBASIC21.71■■□□□ 1.07
ABCA4P78363 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ABCA4P78363 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ABCA4P78363 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.71■■□□□ 1.07
ABCA4P78363 AC100797.4-201ENST00000631653 1827 ntBASIC21.71■■□□□ 1.07
ABCA4P78363 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ABCA4P78363 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ABCA4P78363 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ABCA4P78363 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
ABCA4P78363 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ABCA4P78363 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ABCA4P78363 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
ABCA4P78363 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.69■■□□□ 1.06
ABCA4P78363 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
ABCA4P78363 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
ABCA4P78363 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ABCA4P78363 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
ABCA4P78363 RAP2CP1-202ENST00000605179 643 ntBASIC21.68■■□□□ 1.06
ABCA4P78363 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
ABCA4P78363 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
ABCA4P78363 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.68■■□□□ 1.06
ABCA4P78363 AC126177.7-201ENST00000547904 679 ntBASIC21.68■■□□□ 1.06
ABCA4P78363 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC21.68■■□□□ 1.06
ABCA4P78363 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA4P78363 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.67■■□□□ 1.06
ABCA4P78363 AC025884.2-201ENST00000553429 711 ntBASIC21.67■■□□□ 1.06
ABCA4P78363 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA4P78363 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.67■■□□□ 1.06
ABCA4P78363 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.67■■□□□ 1.06
ABCA4P78363 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.67■■□□□ 1.06
ABCA4P78363 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ABCA4P78363 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
ABCA4P78363 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.66■■□□□ 1.06
ABCA4P78363 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.66■■□□□ 1.06
ABCA4P78363 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
ABCA4P78363 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ABCA4P78363 AC007029.1-201ENST00000604183 313 ntBASIC21.66■■□□□ 1.06
ABCA4P78363 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
ABCA4P78363 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ABCA4P78363 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
ABCA4P78363 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.64■■□□□ 1.05
ABCA4P78363 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ABCA4P78363 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ABCA4P78363 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
ABCA4P78363 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ABCA4P78363 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms