Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 LZTS2-207ENST00000489526 802 ntTSL 221.36■■□□□ 1.018e-7■■■■■ 241.2
SF3B1O75533 INTS6-217ENST00000491723 713 ntTSL 521.36■■□□□ 1.011e-10■■■■■ 241.2
SF3B1O75533 TMEM175-204ENST00000502513 412 ntTSL 321.3■■□□□ 11e-10■■■■■ 241.2
SF3B1O75533 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC21.3■■□□□ 11e-10■■■■■ 241.2
SF3B1O75533 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.16■□□□□ 0.981e-10■■■■■ 241.2
SF3B1O75533 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.16■□□□□ 0.981e-10■■■■■ 241.2
SF3B1O75533 PACRGL-223ENST00000510051 981 ntTSL 1 (best)21.16■□□□□ 0.981e-10■■■■■ 241.2
SF3B1O75533 WDR41-203ENST00000503035 854 ntTSL 521.11■□□□□ 0.972e-20■■■■■ 241.2
SF3B1O75533 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.951e-10■■■■■ 241.2
SF3B1O75533 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.931e-10■■■■■ 241.2
SF3B1O75533 FLT4-204ENST00000502293 888 ntTSL 1 (best)20.81■□□□□ 0.921e-10■■■■■ 241.2
SF3B1O75533 ZNF780B-204ENST00000594811 444 ntTSL 320.81■□□□□ 0.921e-10■■■■■ 241.2
SF3B1O75533 PHC1-202ENST00000433847 1991 ntTSL 220.8■□□□□ 0.921e-10■■■■■ 241.2
SF3B1O75533 PACRGL-209ENST00000503747 848 ntTSL 520.78■□□□□ 0.921e-10■■■■■ 241.2
SF3B1O75533 KIFC3-221ENST00000565397 810 ntTSL 320.75■□□□□ 0.911e-10■■■■■ 241.2
SF3B1O75533 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.67■□□□□ 0.91e-10■■■■■ 241.2
SF3B1O75533 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.66■□□□□ 0.92e-20■■■■■ 241.2
SF3B1O75533 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.881e-10■■■■■ 241.2
SF3B1O75533 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.53■□□□□ 0.881e-10■■■■■ 241.2
SF3B1O75533 WSB2-207ENST00000540129 1524 ntTSL 1 (best)20.44■□□□□ 0.861e-10■■■■■ 241.2
SF3B1O75533 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.3■□□□□ 0.841e-10■■■■■ 241.2
SF3B1O75533 PSPC1-202ENST00000427943 866 ntTSL 520.22■□□□□ 0.831e-10■■■■■ 241.2
SF3B1O75533 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.831e-10■■■■■ 241.2
SF3B1O75533 SSU72-204ENST00000378726 2238 ntTSL 220.05■□□□□ 0.81e-10■■■■■ 241.2
SF3B1O75533 GPAA1-205ENST00000525308 903 ntTSL 220.02■□□□□ 0.791e-10■■■■■ 241.2
SF3B1O75533 FLT4-210ENST00000513527 684 ntTSL 1 (best)20.02■□□□□ 0.791e-10■■■■■ 241.2
SF3B1O75533 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.771e-10■■■■■ 241.2
SF3B1O75533 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.82■□□□□ 0.761e-10■■■■■ 241.2
SF3B1O75533 PLCG1-211ENST00000490253 527 ntTSL 219.81■□□□□ 0.761e-10■■■■■ 241.2
SF3B1O75533 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.765e-8■■■■■ 241.2
SF3B1O75533 PSMD8-204ENST00000591216 611 ntTSL 319.61■□□□□ 0.731e-10■■■■■ 241.2
SF3B1O75533 TMEM175-219ENST00000515492 784 ntTSL 519.53■□□□□ 0.721e-10■■■■■ 241.2
SF3B1O75533 PLA2G15-206ENST00000564827 781 ntTSL 519.41■□□□□ 0.71e-10■■■■■ 241.2
SF3B1O75533 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.32■□□□□ 0.681e-10■■■■■ 241.2
SF3B1O75533 PACRGL-230ENST00000514292 580 ntTSL 419.32■□□□□ 0.681e-10■■■■■ 241.2
SF3B1O75533 LZTS2-204ENST00000429732 701 ntTSL 519.31■□□□□ 0.688e-7■■■■■ 241.2
SF3B1O75533 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.31■□□□□ 0.681e-10■■■■■ 241.2
SF3B1O75533 PAXBP1-204ENST00000443785 2920 ntTSL 1 (best)19.29■□□□□ 0.681e-10■■■■■ 241.2
SF3B1O75533 SRM-206ENST00000490101 461 ntTSL 219.27■□□□□ 0.681e-10■■■■■ 241.2
SF3B1O75533 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.24■□□□□ 0.671e-10■■■■■ 241.2
SF3B1O75533 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.19■□□□□ 0.661e-10■■■■■ 241.2
SF3B1O75533 TMEM175-217ENST00000514453 683 ntTSL 519.08■□□□□ 0.651e-10■■■■■ 241.2
SF3B1O75533 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.641e-10■■■■■ 241.2
SF3B1O75533 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.04■□□□□ 0.641e-10■■■■■ 241.2
SF3B1O75533 WDR41-219ENST00000511791 429 ntTSL 319.02■□□□□ 0.642e-20■■■■■ 241.2
SF3B1O75533 AFG3L2-203ENST00000590811 627 ntTSL 319■□□□□ 0.635e-6■■■■■ 241.2
SF3B1O75533 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.61e-10■■■■■ 241.2
SF3B1O75533 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.581e-10■■■■■ 241.2
SF3B1O75533 AP002990.1-201ENST00000526409 1954 ntTSL 518.64■□□□□ 0.571e-10■■■■■ 241.2
SF3B1O75533 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.63■□□□□ 0.571e-10■■■■■ 241.2
SF3B1O75533 ZNF639-204ENST00000481587 584 ntTSL 318.51■□□□□ 0.551e-10■■■■■ 241.2
SF3B1O75533 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.531e-10■■■■■ 241.2
SF3B1O75533 TMEM175-221ENST00000515876 1007 ntTSL 1 (best)18.35■□□□□ 0.531e-10■■■■■ 241.2
SF3B1O75533 MESD-202ENST00000422879 1392 ntTSL 218.32■□□□□ 0.521e-10■■■■■ 241.2
SF3B1O75533 WDR41-221ENST00000512168 549 ntTSL 418.27■□□□□ 0.522e-20■■■■■ 241.2
SF3B1O75533 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.511e-10■■■■■ 241.2
SF3B1O75533 TSHZ1-203ENST00000560918 1022 ntTSL 418.22■□□□□ 0.511e-10■■■■■ 241.2
SF3B1O75533 MCM3AP-AS1-208ENST00000590829 703 ntTSL 418.18■□□□□ 0.51e-10■■■■■ 241.2
SF3B1O75533 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.09■□□□□ 0.491e-10■■■■■ 241.2
SF3B1O75533 ARRB2-219ENST00000576235 991 ntTSL 518.06■□□□□ 0.481e-10■■■■■ 241.2
SF3B1O75533 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.482e-6■■■■■ 241.2
SF3B1O75533 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.04■□□□□ 0.481e-10■■■■■ 241.2
SF3B1O75533 PACRGL-215ENST00000506702 1233 ntTSL 517.99■□□□□ 0.471e-10■■■■■ 241.2
SF3B1O75533 LZTS2-203ENST00000426584 816 ntTSL 317.96■□□□□ 0.468e-7■■■■■ 241.2
SF3B1O75533 SAC3D1-206ENST00000533017 755 ntTSL 317.92■□□□□ 0.461e-10■■■■■ 241.2
SF3B1O75533 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.452e-6■■■■■ 241.2
SF3B1O75533 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.452e-6■■■■■ 241.2
SF3B1O75533 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.441e-10■■■■■ 241.2
SF3B1O75533 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.77■□□□□ 0.441e-10■■■■■ 241.2
SF3B1O75533 KCTD15-209ENST00000590771 577 ntTSL 317.74■□□□□ 0.431e-10■■■■■ 241.2
SF3B1O75533 GPAA1-203ENST00000524418 825 ntTSL 317.74■□□□□ 0.431e-10■■■■■ 241.2
SF3B1O75533 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.411e-10■■■■■ 241.2
SF3B1O75533 UQCC1-219ENST00000491125 990 ntTSL 517.57■□□□□ 0.41e-10■■■■■ 241.2
SF3B1O75533 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.57■□□□□ 0.41e-10■■■■■ 241.2
SF3B1O75533 PLA2G15-211ENST00000568082 929 ntTSL 517.52■□□□□ 0.41e-10■■■■■ 241.2
SF3B1O75533 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.43■□□□□ 0.381e-10■■■■■ 241.2
SF3B1O75533 FLT4-203ENST00000424276 2298 ntTSL 1 (best)17.34■□□□□ 0.371e-10■■■■■ 241.2
SF3B1O75533 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.361e-10■■■■■ 241.2
SF3B1O75533 TMEM175-213ENST00000509508 621 ntTSL 317.22■□□□□ 0.351e-10■■■■■ 241.2
SF3B1O75533 TMEM175-214ENST00000510493 1006 ntTSL 517.22■□□□□ 0.351e-10■■■■■ 241.2
SF3B1O75533 PACRGL-228ENST00000513590 915 ntTSL 517.21■□□□□ 0.351e-10■■■■■ 241.2
SF3B1O75533 WDR41-217ENST00000511036 805 ntTSL 517.16■□□□□ 0.342e-20■■■■■ 241.2
SF3B1O75533 TMEM175-216ENST00000513952 2084 ntTSL 1 (best)17.15■□□□□ 0.341e-10■■■■■ 241.2
SF3B1O75533 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.14■□□□□ 0.331e-10■■■■■ 241.2
SF3B1O75533 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.09■□□□□ 0.331e-10■■■■■ 241.2
SF3B1O75533 WDR41-206ENST00000506307 582 ntTSL 317.05■□□□□ 0.322e-20■■■■■ 241.2
SF3B1O75533 MIGA2-202ENST00000414342 574 ntTSL 517.01■□□□□ 0.311e-10■■■■■ 241.2
SF3B1O75533 TTC12-207ENST00000464224 2985 ntTSL 516.97■□□□□ 0.311e-10■■■■■ 241.2
SF3B1O75533 PFAS-202ENST00000546020 2652 ntTSL 216.92■□□□□ 0.37e-8■■■■■ 241.2
SF3B1O75533 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.91■□□□□ 0.31e-10■■■■■ 241.2
SF3B1O75533 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.9■□□□□ 0.31e-10■■■■■ 241.2
SF3B1O75533 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.86■□□□□ 0.291e-10■■■■■ 241.2
SF3B1O75533 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.86■□□□□ 0.291e-10■■■■■ 241.2
SF3B1O75533 SH3BP5L-203ENST00000484202 3110 ntTSL 216.85■□□□□ 0.291e-10■■■■■ 241.2
SF3B1O75533 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.271e-10■■■■■ 241.2
SF3B1O75533 MIER2-203ENST00000587966 462 ntTSL 516.7■□□□□ 0.261e-10■■■■■ 241.2
SF3B1O75533 ACTR1A-203ENST00000480947 512 ntTSL 316.53■□□□□ 0.241e-10■■■■■ 241.2
SF3B1O75533 DHRS2-208ENST00000556729 5318 ntTSL 216.5■□□□□ 0.231e-10■■■■■ 241.2
SF3B1O75533 CLASP1-210ENST00000472776 1982 ntTSL 216.49■□□□□ 0.231e-10■■■■■ 241.2
SF3B1O75533 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21e-10■■■■■ 241.2
Retrieved 100 of 46,956 protein–RNA pairs in 4040.9 ms