Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CBX4O00257 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CBX4O00257 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
CBX4O00257 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
CBX4O00257 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 CHST11-203ENST00000547956 936 ntTSL 2 BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.72
CBX4O00257 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CBX4O00257 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CBX4O00257 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC25.78■■□□□ 1.72
CBX4O00257 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CBX4O00257 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC25.78■■□□□ 1.72
CBX4O00257 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC25.78■■□□□ 1.72
CBX4O00257 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
CBX4O00257 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CBX4O00257 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
CBX4O00257 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CBX4O00257 SHF-206ENST00000560471 2499 ntTSL 5 BASIC25.77■■□□□ 1.72
CBX4O00257 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CBX4O00257 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CBX4O00257 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CBX4O00257 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CBX4O00257 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
CBX4O00257 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CBX4O00257 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
CBX4O00257 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
CBX4O00257 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CBX4O00257 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CBX4O00257 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC25.75■■□□□ 1.71
CBX4O00257 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC25.75■■□□□ 1.71
CBX4O00257 AC148477.6-201ENST00000623746 465 ntBASIC25.75■■□□□ 1.71
CBX4O00257 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.75■■□□□ 1.71
CBX4O00257 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
CBX4O00257 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
CBX4O00257 MIR219A2-201ENST00000608502 1504 ntBASIC25.74■■□□□ 1.71
CBX4O00257 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC25.74■■□□□ 1.71
CBX4O00257 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC25.73■■□□□ 1.71
CBX4O00257 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CBX4O00257 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CBX4O00257 PROC-203ENST00000409048 1586 ntTSL 5 BASIC25.73■■□□□ 1.71
CBX4O00257 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
CBX4O00257 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC25.71■■□□□ 1.71
CBX4O00257 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC25.7■■□□□ 1.7
CBX4O00257 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CBX4O00257 TPT1-202ENST00000379055 948 ntTSL 2 BASIC25.7■■□□□ 1.7
CBX4O00257 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC25.7■■□□□ 1.7
CBX4O00257 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CBX4O00257 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC25.69■■□□□ 1.7
CBX4O00257 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CBX4O00257 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC25.69■■□□□ 1.7
CBX4O00257 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
CBX4O00257 SRP68-213ENST00000629930 165 ntTSL 5 BASIC25.69■■□□□ 1.7
CBX4O00257 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CBX4O00257 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CBX4O00257 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC25.68■■□□□ 1.7
CBX4O00257 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CBX4O00257 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
CBX4O00257 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC25.68■■□□□ 1.7
CBX4O00257 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CBX4O00257 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC25.67■■□□□ 1.7
CBX4O00257 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CBX4O00257 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CBX4O00257 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CBX4O00257 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC25.66■■□□□ 1.7
CBX4O00257 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC25.66■■□□□ 1.7
CBX4O00257 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CBX4O00257 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
CBX4O00257 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CBX4O00257 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CBX4O00257 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CBX4O00257 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CBX4O00257 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CBX4O00257 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CBX4O00257 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CBX4O00257 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
CBX4O00257 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.63■■□□□ 1.69
CBX4O00257 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC25.63■■□□□ 1.69
CBX4O00257 AC018358.1-201ENST00000631079 1402 ntBASIC25.63■■□□□ 1.69
CBX4O00257 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CBX4O00257 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
CBX4O00257 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CBX4O00257 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
CBX4O00257 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC25.61■■□□□ 1.69
CBX4O00257 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CBX4O00257 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CBX4O00257 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
CBX4O00257 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
CBX4O00257 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC25.59■■□□□ 1.69
CBX4O00257 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
CBX4O00257 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC25.59■■□□□ 1.69
CBX4O00257 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms