Protein–RNA interactions for Protein: A0A0B4J264

TRAV38-1, T-cell receptor alpha variable 38-1 (Fragment), humanhuman

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV38-1A0A0B4J264 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.19■□□□□ 0.98
TRAV38-1A0A0B4J264 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV38-1A0A0B4J264 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV38-1A0A0B4J264 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TRAV38-1A0A0B4J264 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.18■□□□□ 0.98
TRAV38-1A0A0B4J264 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV38-1A0A0B4J264 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV38-1A0A0B4J264 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV38-1A0A0B4J264 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV38-1A0A0B4J264 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV38-1A0A0B4J264 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV38-1A0A0B4J264 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV38-1A0A0B4J264 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV38-1A0A0B4J264 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
TRAV38-1A0A0B4J264 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.16■□□□□ 0.98
TRAV38-1A0A0B4J264 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV38-1A0A0B4J264 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV38-1A0A0B4J264 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV38-1A0A0B4J264 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.15■□□□□ 0.98
TRAV38-1A0A0B4J264 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.15■□□□□ 0.98
TRAV38-1A0A0B4J264 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.15■□□□□ 0.98
TRAV38-1A0A0B4J264 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV38-1A0A0B4J264 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
TRAV38-1A0A0B4J264 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
TRAV38-1A0A0B4J264 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
TRAV38-1A0A0B4J264 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV38-1A0A0B4J264 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV38-1A0A0B4J264 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
TRAV38-1A0A0B4J264 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV38-1A0A0B4J264 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
TRAV38-1A0A0B4J264 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
TRAV38-1A0A0B4J264 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.12■□□□□ 0.97
TRAV38-1A0A0B4J264 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.12■□□□□ 0.97
TRAV38-1A0A0B4J264 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV38-1A0A0B4J264 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV38-1A0A0B4J264 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV38-1A0A0B4J264 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV38-1A0A0B4J264 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
TRAV38-1A0A0B4J264 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.11■□□□□ 0.97
TRAV38-1A0A0B4J264 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV38-1A0A0B4J264 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
TRAV38-1A0A0B4J264 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV38-1A0A0B4J264 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
TRAV38-1A0A0B4J264 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV38-1A0A0B4J264 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV38-1A0A0B4J264 AC148477.6-201ENST00000623746 465 ntBASIC21.09■□□□□ 0.97
TRAV38-1A0A0B4J264 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
TRAV38-1A0A0B4J264 AC142086.6-201ENST00000621154 1765 ntBASIC21.09■□□□□ 0.97
TRAV38-1A0A0B4J264 AC018358.1-201ENST00000631079 1402 ntBASIC21.09■□□□□ 0.97
TRAV38-1A0A0B4J264 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
TRAV38-1A0A0B4J264 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV38-1A0A0B4J264 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV38-1A0A0B4J264 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV38-1A0A0B4J264 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV38-1A0A0B4J264 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV38-1A0A0B4J264 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV38-1A0A0B4J264 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV38-1A0A0B4J264 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
TRAV38-1A0A0B4J264 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.07■□□□□ 0.96
TRAV38-1A0A0B4J264 MIR4449-201ENST00000578365 66 ntBASIC21.07■□□□□ 0.96
TRAV38-1A0A0B4J264 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.07■□□□□ 0.96
TRAV38-1A0A0B4J264 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
TRAV38-1A0A0B4J264 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
TRAV38-1A0A0B4J264 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV38-1A0A0B4J264 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.06■□□□□ 0.96
TRAV38-1A0A0B4J264 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV38-1A0A0B4J264 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV38-1A0A0B4J264 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV38-1A0A0B4J264 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
TRAV38-1A0A0B4J264 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV38-1A0A0B4J264 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV38-1A0A0B4J264 MIR219A2-201ENST00000608502 1504 ntBASIC21.04■□□□□ 0.96
TRAV38-1A0A0B4J264 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.03■□□□□ 0.96
TRAV38-1A0A0B4J264 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV38-1A0A0B4J264 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV38-1A0A0B4J264 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.02■□□□□ 0.96
TRAV38-1A0A0B4J264 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
TRAV38-1A0A0B4J264 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV38-1A0A0B4J264 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
TRAV38-1A0A0B4J264 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV38-1A0A0B4J264 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.02■□□□□ 0.95
TRAV38-1A0A0B4J264 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV38-1A0A0B4J264 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.01■□□□□ 0.95
TRAV38-1A0A0B4J264 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV38-1A0A0B4J264 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV38-1A0A0B4J264 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV38-1A0A0B4J264 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms