RNA–Protein interactions for RNA: YMR078C

CTF18, Transcript of Subunit of a complex with Ctf8p, yeastyeast

Gene CTF18, Length 2,226 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTF18YMR078C DRS1P32892 752 aaKnown RBP16■□□□□ 0.15
CTF18YMR078C MTC1P47018 478 aaKnown RBP15.71■□□□□ 0.11
CTF18YMR078C BFR2Q06631 534 aaKnown RBP13.92□□□□□ -0.18
CTF18YMR078C DIP2Q12220 943 aaPredicted RBP13.54□□□□□ -0.24
CTF18YMR078C AVT3P36062 692 aa13.49□□□□□ -0.25
CTF18YMR078C TFA1P36100 482 aa13.31□□□□□ -0.28
CTF18YMR078C RSE1Q04693 1361 aaKnown RBP12.67□□□□□ -0.38
CTF18YMR078C ISW2Q08773 1120 aa12.65□□□□□ -0.38
CTF18YMR078C FAP1P53971 965 aa12.53□□□□□ -0.4
CTF18YMR078C RPG1P38249 964 aaKnown RBP12.53□□□□□ -0.4
CTF18YMR078C PRI1P10363 409 aa12.49□□□□□ -0.41
CTF18YMR078C RPL17AP05740 184 aaKnown RBP12.21□□□□□ -0.45
CTF18YMR078C RPL17BP46990 184 aaKnown RBP12.21□□□□□ -0.45
CTF18YMR078C AAD16Q02895 342 aa12.19□□□□□ -0.46
CTF18YMR078C REB1P21538 810 aa11.99□□□□□ -0.49
CTF18YMR078C SPT21P35209 758 aa11.87□□□□□ -0.51
CTF18YMR078C TSR3Q12094 313 aaKnown RBP11.87□□□□□ -0.51
CTF18YMR078C PRY3P47033 881 aa11.75□□□□□ -0.53
CTF18YMR078C RIM101P33400 625 aa11.72□□□□□ -0.53
CTF18YMR078C PTP3P40048 928 aa11.43□□□□□ -0.58
CTF18YMR078C YKR023WP36119 530 aaKnown RBP11.43□□□□□ -0.58
CTF18YMR078C OXP1P28273 1286 aa11.4□□□□□ -0.58
CTF18YMR078C RQC2Q12532 1038 aaKnown RBP11.33□□□□□ -0.6
CTF18YMR078C MRPL32P25348 183 aa11.32□□□□□ -0.6
CTF18YMR078C YCK3P39962 524 aa11.31□□□□□ -0.6
CTF18YMR078C SSP1P38871 571 aa11.27□□□□□ -0.61
CTF18YMR078C YAH1Q12184 172 aaKnown RBP11.19□□□□□ -0.62
CTF18YMR078C TFC8Q12308 588 aa11.16□□□□□ -0.62
CTF18YMR078C HOP09932 586 aa11.16□□□□□ -0.62
CTF18YMR078C CDC27P38042 758 aa11.12□□□□□ -0.63
CTF18YMR078C YLR271WQ06152 274 aa11.12□□□□□ -0.63
CTF18YMR078C DCD1P06773 312 aa11.11□□□□□ -0.63
CTF18YMR078C YIL055CP40523 627 aaKnown RBP11.11□□□□□ -0.63
CTF18YMR078C HAA1Q12753 694 aaKnown RBP11.07□□□□□ -0.64
CTF18YMR078C DMA1P38823 416 aa11.05□□□□□ -0.64
CTF18YMR078C ARP8Q12386 881 aaKnown RBP RIP-Chip data10.99□□□□□ -0.65 RIP-Chip
CTF18YMR078C RSM7P47150 247 aa10.98□□□□□ -0.65
CTF18YMR078C BCH2P36122 765 aa10.86□□□□□ -0.67
CTF18YMR078C MGA2P40578 1113 aa10.84□□□□□ -0.67
CTF18YMR078C CST9Q06032 482 aa10.81□□□□□ -0.68
CTF18YMR078C AI2P03876 854 aa10.8□□□□□ -0.68
CTF18YMR078C PSD2P53037 1138 aaKnown RBP10.79□□□□□ -0.68
CTF18YMR078C EPS1P40557 701 aa10.66□□□□□ -0.7
CTF18YMR078C BBC1P47068 1157 aa10.64□□□□□ -0.71
CTF18YMR078C BDF1P35817 686 aa10.6□□□□□ -0.71
CTF18YMR078C SCY1P53009 804 aa10.59□□□□□ -0.71
CTF18YMR078C MAP2P38174 421 aaKnown RBP10.58□□□□□ -0.72
CTF18YMR078C UBP10P53874 792 aaPredicted RBP10.55□□□□□ -0.72
CTF18YMR078C YGL015CP33199 130 aa10.49□□□□□ -0.73
CTF18YMR078C MRM1P25270 412 aa10.48□□□□□ -0.73
CTF18YMR078C RCR1P38212 213 aa10.44□□□□□ -0.74
CTF18YMR078C RAM2P29703 316 aa10.43□□□□□ -0.74
CTF18YMR078C SAS10Q12136 610 aaPredicted RBP10.41□□□□□ -0.74
CTF18YMR078C SLX5P32828 619 aaKnown RBP10.34□□□□□ -0.75
CTF18YMR078C RTG3P38165 486 aa10.32□□□□□ -0.76
CTF18YMR078C VPS29P38759 282 aa10.26□□□□□ -0.77
CTF18YMR078C SET1P38827 1080 aaKnown RBP10.21□□□□□ -0.78
CTF18YMR078C MAK11P20484 414 aaKnown RBP10.2□□□□□ -0.78
CTF18YMR078C STS1P38637 319 aa10.11□□□□□ -0.79
CTF18YMR078C YPR148CQ06523 435 aa10.11□□□□□ -0.79
CTF18YMR078C LEU3P08638 886 aa10.1□□□□□ -0.79
CTF18YMR078C YMR1P47147 688 aaKnown RBP RIP-Chip data10.1□□□□□ -0.79not detected
CTF18YMR078C LEO1P38439 464 aa10.09□□□□□ -0.79
CTF18YMR078C COQ8P27697 501 aa10.06□□□□□ -0.8
CTF18YMR078C DBP1P24784 617 aaKnown RBP10.05□□□□□ -0.8
CTF18YMR078C TIF4632P39936 914 aaKnown RBP10.05□□□□□ -0.8
CTF18YMR078C YFR006WP43590 535 aa10.04□□□□□ -0.8
CTF18YMR078C VPS70P47161 811 aa10.03□□□□□ -0.8
CTF18YMR078C NSR1P27476 414 aaKnown RBP RIP-Chip data10.02□□□□□ -0.81not detected
CTF18YMR078C TGL3P40308 642 aa10.02□□□□□ -0.81
CTF18YMR078C YOR238WQ08634 303 aa10.02□□□□□ -0.81
CTF18YMR078C EDS1P38073 919 aa10.01□□□□□ -0.81
CTF18YMR078C IFH1P39520 1085 aa9.99□□□□□ -0.81
CTF18YMR078C MIF2P35201 549 aa9.96□□□□□ -0.82
CTF18YMR078C CKB1P43639 278 aa9.95□□□□□ -0.82
CTF18YMR078C YAP5P40574 245 aa9.94□□□□□ -0.82
CTF18YMR078C PIB1Q06651 286 aa9.94□□□□□ -0.82
CTF18YMR078C NOP53Q12080 455 aaKnown RBP9.92□□□□□ -0.82
CTF18YMR078C SPB4P25808 606 aaPredicted RBP9.87□□□□□ -0.83
CTF18YMR078C PTC3P34221 468 aaKnown RBP9.87□□□□□ -0.83
CTF18YMR078C VMA1P17255 1071 aaKnown RBP9.84□□□□□ -0.83
CTF18YMR078C DSF2P38213 736 aa9.82□□□□□ -0.84
CTF18YMR078C MST1P07236 462 aa9.82□□□□□ -0.84
CTF18YMR078C PBS2P08018 668 aa9.81□□□□□ -0.84
CTF18YMR078C TAF7Q05021 590 aa9.79□□□□□ -0.84
CTF18YMR078C RPN1P38764 993 aaKnown RBP9.78□□□□□ -0.84
CTF18YMR078C REF2P42073 533 aaPredicted RBP9.75□□□□□ -0.85
CTF18YMR078C SAM3Q08986 587 aa9.74□□□□□ -0.85
CTF18YMR078C GRE2Q12068 342 aaKnown RBP9.68□□□□□ -0.86
CTF18YMR078C GUT1P32190 709 aa9.67□□□□□ -0.86
CTF18YMR078C ATH1P48016 1211 aa9.67□□□□□ -0.86
CTF18YMR078C MAM3Q12296 706 aa9.66□□□□□ -0.86
CTF18YMR078C UBP14P38237 781 aaKnown RBP9.65□□□□□ -0.86
CTF18YMR078C COX6P00427 148 aa9.64□□□□□ -0.87
CTF18YMR078C NUP42P49686 430 aaKnown RBP9.64□□□□□ -0.87
CTF18YMR078C SOL3P38858 249 aa9.63□□□□□ -0.87
CTF18YMR078C IES2P40154 320 aa9.63□□□□□ -0.87
CTF18YMR078C YDR090CQ03193 310 aa9.63□□□□□ -0.87
CTF18YMR078C VHR2P40041 505 aa9.62□□□□□ -0.87
CTF18YMR078C GYP5Q12344 894 aa9.62□□□□□ -0.87
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms