RNA–Protein interactions for RNA: ENST00000640859.1

GFAP-238, Transcript of glial fibrillary acidic protein, humanhuman

TSL 5

Gene GFAP, Length 1,162 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GFAP-238ENST00000640859 NISCHQ9Y2I1 1504 aa24.83■■□□□ 1.57
GFAP-238ENST00000640859 AEBP2Q6ZN18 517 aaPredicted RBP24.11■■□□□ 1.45
GFAP-238ENST00000640859 CHIC1Q5VXU3 224 aa23.74■■□□□ 1.39
GFAP-238ENST00000640859 CCDC180Q9P1Z9 1646 aa21.91■■□□□ 1.1
GFAP-238ENST00000640859 ABCC9O60706 1549 aa21.3■■□□□ 1
GFAP-238ENST00000640859 ZCCHC6Q5VYS8 1495 aaKnown RBP20.91■□□□□ 0.94
GFAP-238ENST00000640859 PHF23Q9BUL5 403 aaPredicted RBP20.9■□□□□ 0.94
GFAP-238ENST00000640859 DCAF8L2P0C7V8 631 aa20.82■□□□□ 0.92
GFAP-238ENST00000640859 NACADO15069 1562 aa20.63■□□□□ 0.89
GFAP-238ENST00000640859 RB1CC1Q8TDY2 1594 aa20.62■□□□□ 0.89
GFAP-238ENST00000640859 MYO15BQ96JP2 1530 aa20.55■□□□□ 0.88
GFAP-238ENST00000640859 DCAF1Q9Y4B6 1507 aa20.53■□□□□ 0.88
GFAP-238ENST00000640859 SHROOM4Q9ULL8 1493 aa20.44■□□□□ 0.86
GFAP-238ENST00000640859 SENP3Q9H4L4 574 aaPredicted RBP20.41■□□□□ 0.86
GFAP-238ENST00000640859 SCRIBQ14160 1630 aa20.02■□□□□ 0.8
GFAP-238ENST00000640859 PABPN1Q86U42 306 aaKnown RBP eCLIP19.97■□□□□ 0.79
GFAP-238ENST00000640859 UNC13AQ9UPW8 1703 aa19.91■□□□□ 0.78
GFAP-238ENST00000640859 SUPT5HO00267 1087 aaKnown RBP19.82■□□□□ 0.76
GFAP-238ENST00000640859 BICRAQ9NZM4 1560 aa19.81■□□□□ 0.76
GFAP-238ENST00000640859 RSF1Q96T23 1441 aaPredicted RBP19.39■□□□□ 0.69
GFAP-238ENST00000640859 EIF4G1Q04637 1599 aaKnown RBP19.37■□□□□ 0.69
GFAP-238ENST00000640859 PLPPR3Q6T4P5 718 aa19.34■□□□□ 0.69
GFAP-238ENST00000640859 CECR2Q9BXF3 1484 aa19.28■□□□□ 0.68
GFAP-238ENST00000640859 DNAJC5BQ9UF47 199 aa19.27■□□□□ 0.68
GFAP-238ENST00000640859 BAZ1AQ9NRL2 1556 aaPredicted RBP19.24■□□□□ 0.67
GFAP-238ENST00000640859 CC2D2AQ9P2K1 1620 aa19.23■□□□□ 0.67
GFAP-238ENST00000640859 MROH2BQ7Z745 1585 aa19.2■□□□□ 0.66
GFAP-238ENST00000640859 SMARCA4P51532 1647 aa19.15■□□□□ 0.66
GFAP-238ENST00000640859 SMARCA2P51531 1590 aa19.09■□□□□ 0.65
GFAP-238ENST00000640859 WIZO95785 1651 aa19.06■□□□□ 0.64
GFAP-238ENST00000640859 ATAD2BQ9ULI0 1458 aa19.03■□□□□ 0.64
GFAP-238ENST00000640859 NCAPD3P42695 1498 aa19.01■□□□□ 0.63
GFAP-238ENST00000640859 BAZ1BQ9UIG0 1483 aaKnown RBP18.96■□□□□ 0.63
GFAP-238ENST00000640859 PEG3Q9GZU2 1588 aa18.95■□□□□ 0.62
GFAP-238ENST00000640859 HMGXB3Q12766 1538 aa18.93■□□□□ 0.62
GFAP-238ENST00000640859 FOXD1Q16676 465 aa18.92■□□□□ 0.62
GFAP-238ENST00000640859 TOP2AP11388 1531 aaKnown RBP18.86■□□□□ 0.61
GFAP-238ENST00000640859 CCDC88BA6NC98 1476 aa18.69■□□□□ 0.58
GFAP-238ENST00000640859 TRIM41Q8WV44 630 aa18.61■□□□□ 0.57
GFAP-238ENST00000640859 CADPSQ9ULU8 1353 aa18.52■□□□□ 0.55
GFAP-238ENST00000640859 LAMC3Q9Y6N6 1575 aa18.5■□□□□ 0.55
GFAP-238ENST00000640859 ERCC6Q03468 1493 aa18.48■□□□□ 0.55
GFAP-238ENST00000640859 LOC105371045A0A1W2PR82 267 aa18.46■□□□□ 0.55
GFAP-238ENST00000640859 PDS5BQ9NTI5 1447 aa18.46■□□□□ 0.55
GFAP-238ENST00000640859 NESP48681 1621 aa18.42■□□□□ 0.54
GFAP-238ENST00000640859 CFTRP13569 1480 aa18.39■□□□□ 0.54
GFAP-238ENST00000640859 ABCC8Q09428 1581 aa18.37■□□□□ 0.53
GFAP-238ENST00000640859 PPP6R1Q9UPN7 881 aa18.36■□□□□ 0.53
GFAP-238ENST00000640859 ADRA2BP18089 450 aa18.34■□□□□ 0.53
GFAP-238ENST00000640859 FAM9AQ8IZU1 332 aaPredicted RBP18.29■□□□□ 0.52
GFAP-238ENST00000640859 FANCD2Q9BXW9 1451 aa18.28■□□□□ 0.52
GFAP-238ENST00000640859 CEP164Q9UPV0 1460 aa18.27■□□□□ 0.52
GFAP-238ENST00000640859 WRNQ14191 1432 aaPredicted RBP eCLIP18.21■□□□□ 0.51
GFAP-238ENST00000640859 MRC2Q9UBG0 1479 aa18.18■□□□□ 0.5
GFAP-238ENST00000640859 KIF21AQ7Z4S6 1674 aa18.18■□□□□ 0.5
GFAP-238ENST00000640859 PRDM2Q13029 1718 aa18.18■□□□□ 0.5
GFAP-238ENST00000640859 CUX2O14529 1486 aa18.14■□□□□ 0.5
GFAP-238ENST00000640859 SYNJ1O43426 1573 aa18.14■□□□□ 0.49
GFAP-238ENST00000640859 EEA1Q15075 1411 aa18.11■□□□□ 0.49
GFAP-238ENST00000640859 SOGA1O94964 1423 aa18.1■□□□□ 0.49
GFAP-238ENST00000640859 THOC2Q8NI27 1593 aaKnown RBP18.08■□□□□ 0.48
GFAP-238ENST00000640859 WDR62O43379 1518 aa18.05■□□□□ 0.48
GFAP-238ENST00000640859 RUSC2Q8N2Y8 1516 aa18.04■□□□□ 0.48
GFAP-238ENST00000640859 TOP2BQ02880 1626 aa18.04■□□□□ 0.48
GFAP-238ENST00000640859 BIVM-ERCC5R4GMW8 1640 aa18.03■□□□□ 0.48
GFAP-238ENST00000640859 URB2Q14146 1524 aaKnown RBP18■□□□□ 0.47
GFAP-238ENST00000640859 CSRNP3Q8WYN3 585 aa18■□□□□ 0.47
GFAP-238ENST00000640859 EHMT2Q96KQ7 1210 aa17.99■□□□□ 0.47
GFAP-238ENST00000640859 DNMBPQ6XZF7 1577 aa17.98■□□□□ 0.47
GFAP-238ENST00000640859 TOPBP1Q92547 1522 aa17.98■□□□□ 0.47
GFAP-238ENST00000640859 CUX1P39880 1505 aa17.93■□□□□ 0.46
GFAP-238ENST00000640859 TNIKQ9UKE5 1360 aa17.91■□□□□ 0.46
GFAP-238ENST00000640859 PCGF6Q9BYE7 350 aa17.89■□□□□ 0.45
GFAP-238ENST00000640859 IFT140Q96RY7 1462 aa17.88■□□□□ 0.45
GFAP-238ENST00000640859 PIAS4Q8N2W9 510 aaPredicted RBP17.88■□□□□ 0.45
GFAP-238ENST00000640859 KIF21BO75037 1637 aa17.87■□□□□ 0.45
GFAP-238ENST00000640859 GOLGA3Q08378 1498 aa17.87■□□□□ 0.45
GFAP-238ENST00000640859 POLA1P09884 1462 aaPredicted RBP17.83■□□□□ 0.45
GFAP-238ENST00000640859 FGD5Q6ZNL6 1462 aa17.83■□□□□ 0.45
GFAP-238ENST00000640859 TRIM26Q12899 539 aaPredicted RBP17.83■□□□□ 0.44
GFAP-238ENST00000640859 CEP162Q5TB80 1403 aa17.81■□□□□ 0.44
GFAP-238ENST00000640859 UBTFP17480 764 aaKnown RBP17.76■□□□□ 0.43
GFAP-238ENST00000640859 RAD54L2Q9Y4B4 1467 aa17.74■□□□□ 0.43
GFAP-238ENST00000640859 KIF27Q86VH2 1401 aa17.72■□□□□ 0.43
GFAP-238ENST00000640859 RAPGEF2Q9Y4G8 1499 aa17.71■□□□□ 0.43
GFAP-238ENST00000640859 PRXQ9BXM0 1461 aa17.7■□□□□ 0.42
GFAP-238ENST00000640859 TARBP1Q13395 1621 aaKnown RBP17.69■□□□□ 0.42
GFAP-238ENST00000640859 ERICH3Q5RHP9 1530 aa17.69■□□□□ 0.42
GFAP-238ENST00000640859 WDR97A6NE52 1622 aa17.69■□□□□ 0.42
GFAP-238ENST00000640859 TDRD9Q8NDG6 1382 aaKnown RBP17.68■□□□□ 0.42
GFAP-238ENST00000640859 ABCA10Q8WWZ4 1543 aa17.67■□□□□ 0.42
GFAP-238ENST00000640859 ZNF608Q9ULD9 1512 aaPredicted RBP17.67■□□□□ 0.42
GFAP-238ENST00000640859 HRCP23327 699 aa17.66■□□□□ 0.42
GFAP-238ENST00000640859 AQRO60306 1485 aaKnown RBP eCLIP17.65■□□□□ 0.42
GFAP-238ENST00000640859 EIF4G3O43432 1585 aaKnown RBP17.63■□□□□ 0.41
GFAP-238ENST00000640859 GAPVD1Q14C86 1478 aa17.62■□□□□ 0.41
GFAP-238ENST00000640859 GRIN2BQ13224 1484 aa17.61■□□□□ 0.41
GFAP-238ENST00000640859 CLIP1P30622 1438 aa17.6■□□□□ 0.41
GFAP-238ENST00000640859 IGF1RP08069 1367 aa17.57■□□□□ 0.4
GFAP-238ENST00000640859 FBLN2P98095 1184 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms