RNA–Protein interactions for RNA: ENST00000637952.1

CACNA1A-254, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

Gene CACNA1A, Length 3,894 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-254ENST00000637952 NISCHQ9Y2I1 1504 aa18.53■□□□□ 0.56
CACNA1A-254ENST00000637952 DCAF8L2P0C7V8 631 aa16.66■□□□□ 0.26
CACNA1A-254ENST00000637952 ABCC9O60706 1549 aa16.05■□□□□ 0.16
CACNA1A-254ENST00000637952 CCDC180Q9P1Z9 1646 aa15.95■□□□□ 0.14
CACNA1A-254ENST00000637952 SHROOM4Q9ULL8 1493 aa15.72■□□□□ 0.11
CACNA1A-254ENST00000637952 ZCCHC6Q5VYS8 1495 aaKnown RBP15.39■□□□□ 0.05
CACNA1A-254ENST00000637952 PABPN1Q86U42 306 aaKnown RBP eCLIP15.35■□□□□ 0.05
CACNA1A-254ENST00000637952 RB1CC1Q8TDY2 1594 aa15.24■□□□□ 0.03
CACNA1A-254ENST00000637952 SUPT5HO00267 1087 aaKnown RBP15.22■□□□□ 0.03
CACNA1A-254ENST00000637952 NACADO15069 1562 aa15.2■□□□□ 0.02
CACNA1A-254ENST00000637952 SCRIBQ14160 1630 aa15.09■□□□□ 0.01
CACNA1A-254ENST00000637952 DCAF1Q9Y4B6 1507 aa15.05■□□□□ 0
CACNA1A-254ENST00000637952 MYO15BQ96JP2 1530 aa14.94□□□□□ -0.02
CACNA1A-254ENST00000637952 CECR2Q9BXF3 1484 aa14.53□□□□□ -0.08
CACNA1A-254ENST00000637952 BICRAQ9NZM4 1560 aa14.42□□□□□ -0.1
CACNA1A-254ENST00000637952 BAZ1AQ9NRL2 1556 aaPredicted RBP14.4□□□□□ -0.1
CACNA1A-254ENST00000637952 RSF1Q96T23 1441 aaPredicted RBP14.4□□□□□ -0.1
CACNA1A-254ENST00000637952 UNC13AQ9UPW8 1703 aa14.35□□□□□ -0.11
CACNA1A-254ENST00000637952 MROH2BQ7Z745 1585 aa14.34□□□□□ -0.11
CACNA1A-254ENST00000637952 BAZ1BQ9UIG0 1483 aaKnown RBP14.31□□□□□ -0.12
CACNA1A-254ENST00000637952 DNAJC5BQ9UF47 199 aa14.29□□□□□ -0.12
CACNA1A-254ENST00000637952 EIF4G1Q04637 1599 aaKnown RBP14.27□□□□□ -0.13
CACNA1A-254ENST00000637952 TRIM41Q8WV44 630 aa14.25□□□□□ -0.13
CACNA1A-254ENST00000637952 SMARCA4P51532 1647 aa14.21□□□□□ -0.13
CACNA1A-254ENST00000637952 SMARCA2P51531 1590 aa14.21□□□□□ -0.13
CACNA1A-254ENST00000637952 ATAD2BQ9ULI0 1458 aa14.21□□□□□ -0.13
CACNA1A-254ENST00000637952 EHMT2Q96KQ7 1210 aa14.2□□□□□ -0.14
CACNA1A-254ENST00000637952 FAM9AQ8IZU1 332 aaPredicted RBP14.18□□□□□ -0.14
CACNA1A-254ENST00000637952 WIZO95785 1651 aa14.14□□□□□ -0.15
CACNA1A-254ENST00000637952 CC2D2AQ9P2K1 1620 aa14.14□□□□□ -0.15
CACNA1A-254ENST00000637952 NCAPD3P42695 1498 aa14.08□□□□□ -0.16
CACNA1A-254ENST00000637952 CCDC88BA6NC98 1476 aa14□□□□□ -0.17
CACNA1A-254ENST00000637952 CHIC1Q5VXU3 224 aa14□□□□□ -0.17
CACNA1A-254ENST00000637952 TOP2AP11388 1531 aaKnown RBP13.99□□□□□ -0.17
CACNA1A-254ENST00000637952 ERCC6Q03468 1493 aa13.99□□□□□ -0.17
CACNA1A-254ENST00000637952 CADPSQ9ULU8 1353 aa13.94□□□□□ -0.18
CACNA1A-254ENST00000637952 RANGAP1P46060 587 aaPredicted RBP13.9□□□□□ -0.18
CACNA1A-254ENST00000637952 PDS5BQ9NTI5 1447 aa13.9□□□□□ -0.18
CACNA1A-254ENST00000637952 HMGXB3Q12766 1538 aa13.89□□□□□ -0.19
CACNA1A-254ENST00000637952 UBTFP17480 764 aaKnown RBP13.85□□□□□ -0.19
CACNA1A-254ENST00000637952 FBLN2P98095 1184 aa13.85□□□□□ -0.19
CACNA1A-254ENST00000637952 NESP48681 1621 aa13.8□□□□□ -0.2
CACNA1A-254ENST00000637952 PEG3Q9GZU2 1588 aa13.8□□□□□ -0.2
CACNA1A-254ENST00000637952 WRNQ14191 1432 aaPredicted RBP eCLIP13.77□□□□□ -0.21
CACNA1A-254ENST00000637952 FANCD2Q9BXW9 1451 aa13.75□□□□□ -0.21
CACNA1A-254ENST00000637952 CEP164Q9UPV0 1460 aa13.73□□□□□ -0.21
CACNA1A-254ENST00000637952 TTBK1Q5TCY1 1321 aaPredicted RBP13.7□□□□□ -0.22
CACNA1A-254ENST00000637952 CFTRP13569 1480 aa13.7□□□□□ -0.22
CACNA1A-254ENST00000637952 PELP1Q8IZL8 1130 aaKnown RBP13.67□□□□□ -0.22
CACNA1A-254ENST00000637952 ATP1B4Q9UN42 357 aaPredicted RBP13.66□□□□□ -0.22
CACNA1A-254ENST00000637952 LOC105371045A0A1W2PR82 267 aa13.66□□□□□ -0.22
CACNA1A-254ENST00000637952 CSRNP3Q8WYN3 585 aa13.66□□□□□ -0.22
CACNA1A-254ENST00000637952 ABCC8Q09428 1581 aa13.65□□□□□ -0.22
CACNA1A-254ENST00000637952 CHMP7Q8WUX9 453 aaPredicted RBP13.62□□□□□ -0.23
CACNA1A-254ENST00000637952 SOGA1O94964 1423 aa13.6□□□□□ -0.23
CACNA1A-254ENST00000637952 PRKCSHP14314 528 aaPredicted RBP13.6□□□□□ -0.23
CACNA1A-254ENST00000637952 LAMC3Q9Y6N6 1575 aa13.6□□□□□ -0.23
CACNA1A-254ENST00000637952 APLP2Q06481 763 aa13.6□□□□□ -0.23
CACNA1A-254ENST00000637952 TDRD9Q8NDG6 1382 aaKnown RBP13.59□□□□□ -0.23
CACNA1A-254ENST00000637952 CUX2O14529 1486 aa13.54□□□□□ -0.24
CACNA1A-254ENST00000637952 KIF27Q86VH2 1401 aa13.53□□□□□ -0.24
CACNA1A-254ENST00000637952 MRC2Q9UBG0 1479 aa13.52□□□□□ -0.24
CACNA1A-254ENST00000637952 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.49□□□□□ -0.25
CACNA1A-254ENST00000637952 HNRNPUL2Q1KMD3 747 aaKnown RBP13.49□□□□□ -0.25
CACNA1A-254ENST00000637952 FGD5Q6ZNL6 1462 aa13.47□□□□□ -0.25
CACNA1A-254ENST00000637952 P3H3Q8IVL6 736 aa13.47□□□□□ -0.25
CACNA1A-254ENST00000637952 RAD54L2Q9Y4B4 1467 aa13.47□□□□□ -0.25
CACNA1A-254ENST00000637952 TOPBP1Q92547 1522 aa13.45□□□□□ -0.26
CACNA1A-254ENST00000637952 AEBP2Q6ZN18 517 aaPredicted RBP13.43□□□□□ -0.26
CACNA1A-254ENST00000637952 MYT1Q01538 1121 aa13.42□□□□□ -0.26
CACNA1A-254ENST00000637952 AQRO60306 1485 aaKnown RBP eCLIP13.4□□□□□ -0.26
CACNA1A-254ENST00000637952 CARMIL1Q5VZK9 1371 aa13.4□□□□□ -0.26
CACNA1A-254ENST00000637952 EEA1Q15075 1411 aa13.39□□□□□ -0.27
CACNA1A-254ENST00000637952 CUX1P39880 1505 aa13.39□□□□□ -0.27
CACNA1A-254ENST00000637952 URB2Q14146 1524 aaKnown RBP13.39□□□□□ -0.27
CACNA1A-254ENST00000637952 POLA1P09884 1462 aaPredicted RBP13.38□□□□□ -0.27
CACNA1A-254ENST00000637952 DNMBPQ6XZF7 1577 aa13.37□□□□□ -0.27
CACNA1A-254ENST00000637952 SYNJ1O43426 1573 aa13.35□□□□□ -0.27
CACNA1A-254ENST00000637952 IFT140Q96RY7 1462 aa13.34□□□□□ -0.27
CACNA1A-254ENST00000637952 GAPVD1Q14C86 1478 aa13.34□□□□□ -0.27
CACNA1A-254ENST00000637952 ARID3CA6NKF2 412 aa13.34□□□□□ -0.27
CACNA1A-254ENST00000637952 PPARGC1BQ86YN6 1023 aaKnown RBP13.33□□□□□ -0.28
CACNA1A-254ENST00000637952 SLC24A1O60721 1099 aa13.32□□□□□ -0.28
CACNA1A-254ENST00000637952 RUSC2Q8N2Y8 1516 aa13.32□□□□□ -0.28
CACNA1A-254ENST00000637952 KIF21AQ7Z4S6 1674 aa13.32□□□□□ -0.28
CACNA1A-254ENST00000637952 OSCARQ8IYS5 282 aa13.31□□□□□ -0.28
CACNA1A-254ENST00000637952 TOP2BQ02880 1626 aa13.29□□□□□ -0.28
CACNA1A-254ENST00000637952 IGF1RP08069 1367 aa13.28□□□□□ -0.28
CACNA1A-254ENST00000637952 NPM1P06748 294 aaKnown RBP eCLIP13.25□□□□□ -0.29
CACNA1A-254ENST00000637952 GOLGA3Q08378 1498 aa13.25□□□□□ -0.29
CACNA1A-254ENST00000637952 GRIN2BQ13224 1484 aa13.25□□□□□ -0.29
CACNA1A-254ENST00000637952 ZNF608Q9ULD9 1512 aaPredicted RBP13.24□□□□□ -0.29
CACNA1A-254ENST00000637952 JPH4Q96JJ6 628 aa13.21□□□□□ -0.3
CACNA1A-254ENST00000637952 RAPGEF2Q9Y4G8 1499 aa13.2□□□□□ -0.3
CACNA1A-254ENST00000637952 ABCA10Q8WWZ4 1543 aa13.2□□□□□ -0.3
CACNA1A-254ENST00000637952 WDR62O43379 1518 aa13.19□□□□□ -0.3
CACNA1A-254ENST00000637952 SNAPC4Q5SXM2 1469 aa13.17□□□□□ -0.3
CACNA1A-254ENST00000637952 FHAD1B1AJZ9 1412 aa13.17□□□□□ -0.3
CACNA1A-254ENST00000637952 CLIP1P30622 1438 aa13.16□□□□□ -0.3
CACNA1A-254ENST00000637952 PRDM2Q13029 1718 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms