RNA–Protein interactions for RNA: ENST00000637941.1

TCF4-289, Transcript of transcription factor 4, humanhuman

TSL 5

Gene TCF4, Length 2,115 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-289ENST00000637941 NISCHQ9Y2I1 1504 aa26.39■■□□□ 1.82
TCF4-289ENST00000637941 CCDC180Q9P1Z9 1646 aa22.81■■□□□ 1.24
TCF4-289ENST00000637941 ZCCHC6Q5VYS8 1495 aaKnown RBP22.36■■□□□ 1.17
TCF4-289ENST00000637941 SHROOM4Q9ULL8 1493 aa22.21■■□□□ 1.15
TCF4-289ENST00000637941 SUPT5HO00267 1087 aaKnown RBP21.83■■□□□ 1.09
TCF4-289ENST00000637941 DCAF1Q9Y4B6 1507 aa21.82■■□□□ 1.08
TCF4-289ENST00000637941 DCAF8L2P0C7V8 631 aa21.79■■□□□ 1.08
TCF4-289ENST00000637941 ABCC9O60706 1549 aa21.39■■□□□ 1.02
TCF4-289ENST00000637941 MYO15BQ96JP2 1530 aa21.39■■□□□ 1.01
TCF4-289ENST00000637941 CHIC1Q5VXU3 224 aa21.34■■□□□ 1.01
TCF4-289ENST00000637941 NACADO15069 1562 aa21.2■□□□□ 0.98
TCF4-289ENST00000637941 SCRIBQ14160 1630 aa21.08■□□□□ 0.96
TCF4-289ENST00000637941 RB1CC1Q8TDY2 1594 aa20.96■□□□□ 0.95
TCF4-289ENST00000637941 RSF1Q96T23 1441 aaPredicted RBP20.81■□□□□ 0.92
TCF4-289ENST00000637941 HRCP23327 699 aa20.79■□□□□ 0.92
TCF4-289ENST00000637941 PCGF6Q9BYE7 350 aa20.64■□□□□ 0.89
TCF4-289ENST00000637941 LOC105371045A0A1W2PR82 267 aa20.56■□□□□ 0.88
TCF4-289ENST00000637941 UNC13AQ9UPW8 1703 aa20.54■□□□□ 0.88
TCF4-289ENST00000637941 CECR2Q9BXF3 1484 aa20.48■□□□□ 0.87
TCF4-289ENST00000637941 TRIM41Q8WV44 630 aa20.47■□□□□ 0.87
TCF4-289ENST00000637941 TRIM26Q12899 539 aaPredicted RBP20.42■□□□□ 0.86
TCF4-289ENST00000637941 MROH2BQ7Z745 1585 aa20.42■□□□□ 0.86
TCF4-289ENST00000637941 BAZ1AQ9NRL2 1556 aaPredicted RBP20.36■□□□□ 0.85
TCF4-289ENST00000637941 WIZO95785 1651 aa20.34■□□□□ 0.85
TCF4-289ENST00000637941 BICRAQ9NZM4 1560 aa20.31■□□□□ 0.84
TCF4-289ENST00000637941 PABPN1Q86U42 306 aaKnown RBP eCLIP20.26■□□□□ 0.83
TCF4-289ENST00000637941 SMARCA4P51532 1647 aa20.2■□□□□ 0.82
TCF4-289ENST00000637941 EIF4G1Q04637 1599 aaKnown RBP20.16■□□□□ 0.82
TCF4-289ENST00000637941 TOP2AP11388 1531 aaKnown RBP20.15■□□□□ 0.82
TCF4-289ENST00000637941 ZEB1P37275 1124 aaPredicted RBP20.14■□□□□ 0.81
TCF4-289ENST00000637941 FAM9AQ8IZU1 332 aaPredicted RBP20.11■□□□□ 0.81
TCF4-289ENST00000637941 PPARGC1BQ86YN6 1023 aaKnown RBP20.11■□□□□ 0.81
TCF4-289ENST00000637941 SMARCA2P51531 1590 aa19.98■□□□□ 0.79
TCF4-289ENST00000637941 CCDC88BA6NC98 1476 aa19.94■□□□□ 0.78
TCF4-289ENST00000637941 PEG3Q9GZU2 1588 aa19.91■□□□□ 0.78
TCF4-289ENST00000637941 ABCC8Q09428 1581 aa19.83■□□□□ 0.77
TCF4-289ENST00000637941 EEA1Q15075 1411 aa19.83■□□□□ 0.77
TCF4-289ENST00000637941 EHMT2Q96KQ7 1210 aa19.81■□□□□ 0.76
TCF4-289ENST00000637941 ATAD2BQ9ULI0 1458 aa19.81■□□□□ 0.76
TCF4-289ENST00000637941 WRNQ14191 1432 aaPredicted RBP eCLIP19.75■□□□□ 0.75
TCF4-289ENST00000637941 BAZ1BQ9UIG0 1483 aaKnown RBP19.72■□□□□ 0.75
TCF4-289ENST00000637941 TNIKQ9UKE5 1360 aa19.69■□□□□ 0.74
TCF4-289ENST00000637941 CEP162Q5TB80 1403 aa19.65■□□□□ 0.74
TCF4-289ENST00000637941 SOGA1O94964 1423 aa19.62■□□□□ 0.73
TCF4-289ENST00000637941 CSRNP3Q8WYN3 585 aa19.6■□□□□ 0.73
TCF4-289ENST00000637941 GOLGA3Q08378 1498 aa19.59■□□□□ 0.73
TCF4-289ENST00000637941 NCAPD3P42695 1498 aa19.57■□□□□ 0.72
TCF4-289ENST00000637941 HMGXB3Q12766 1538 aa19.56■□□□□ 0.72
TCF4-289ENST00000637941 KIF21BO75037 1637 aa19.52■□□□□ 0.72
TCF4-289ENST00000637941 CEP164Q9UPV0 1460 aa19.5■□□□□ 0.71
TCF4-289ENST00000637941 CCER1Q8TC90 406 aaPredicted RBP19.49■□□□□ 0.71
TCF4-289ENST00000637941 RUSC2Q8N2Y8 1516 aa19.48■□□□□ 0.71
TCF4-289ENST00000637941 SYNJ1O43426 1573 aa19.47■□□□□ 0.71
TCF4-289ENST00000637941 UBTFP17480 764 aaKnown RBP19.47■□□□□ 0.71
TCF4-289ENST00000637941 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.42■□□□□ 0.7
TCF4-289ENST00000637941 TOP2BQ02880 1626 aa19.34■□□□□ 0.69
TCF4-289ENST00000637941 CC2D2AQ9P2K1 1620 aa19.34■□□□□ 0.69
TCF4-289ENST00000637941 BIVM-ERCC5R4GMW8 1640 aa19.31■□□□□ 0.68
TCF4-289ENST00000637941 CLIP1P30622 1438 aa19.3■□□□□ 0.68
TCF4-289ENST00000637941 VPS8Q8N3P4 1428 aa19.26■□□□□ 0.67
TCF4-289ENST00000637941 TTBK1Q5TCY1 1321 aaPredicted RBP19.23■□□□□ 0.67
TCF4-289ENST00000637941 CFTRP13569 1480 aa19.23■□□□□ 0.67
TCF4-289ENST00000637941 ERICH3Q5RHP9 1530 aa19.21■□□□□ 0.67
TCF4-289ENST00000637941 RAPGEF2Q9Y4G8 1499 aa19.2■□□□□ 0.66
TCF4-289ENST00000637941 APLP2Q06481 763 aa19.18■□□□□ 0.66
TCF4-289ENST00000637941 DIEXFQ68CQ4 756 aaKnown RBP19.13■□□□□ 0.65
TCF4-289ENST00000637941 PRDM2Q13029 1718 aa19.12■□□□□ 0.65
TCF4-289ENST00000637941 CADPSQ9ULU8 1353 aa19.12■□□□□ 0.65
TCF4-289ENST00000637941 PRXQ9BXM0 1461 aa19.1■□□□□ 0.65
TCF4-289ENST00000637941 SCAF1Q9H7N4 1312 aaKnown RBP19.06■□□□□ 0.64
TCF4-289ENST00000637941 PELP1Q8IZL8 1130 aaKnown RBP19.06■□□□□ 0.64
TCF4-289ENST00000637941 CUX1P39880 1505 aa19.04■□□□□ 0.64
TCF4-289ENST00000637941 KIF27Q86VH2 1401 aa19.04■□□□□ 0.64
TCF4-289ENST00000637941 CENPBP07199 599 aaPredicted RBP19.03■□□□□ 0.64
TCF4-289ENST00000637941 ZNF316A6NFI3 1004 aaPredicted RBP19.03■□□□□ 0.64
TCF4-289ENST00000637941 ACIN1Q9UKV3 1341 aaKnown RBP19■□□□□ 0.63
TCF4-289ENST00000637941 HNRNPUL2Q1KMD3 747 aaKnown RBP18.98■□□□□ 0.63
TCF4-289ENST00000637941 ARAP1Q96P48 1450 aa18.97■□□□□ 0.63
TCF4-289ENST00000637941 CLSPNQ9HAW4 1339 aa18.93■□□□□ 0.62
TCF4-289ENST00000637941 FANCD2Q9BXW9 1451 aa18.91■□□□□ 0.62
TCF4-289ENST00000637941 RANGAP1P46060 587 aaPredicted RBP18.88■□□□□ 0.61
TCF4-289ENST00000637941 LAMC3Q9Y6N6 1575 aa18.87■□□□□ 0.61
TCF4-289ENST00000637941 NESP48681 1621 aa18.86■□□□□ 0.61
TCF4-289ENST00000637941 NEUROD1Q13562 356 aa18.85■□□□□ 0.61
TCF4-289ENST00000637941 RRBP1Q9P2E9 1410 aaKnown RBP18.83■□□□□ 0.6
TCF4-289ENST00000637941 FGD5Q6ZNL6 1462 aa18.8■□□□□ 0.6
TCF4-289ENST00000637941 ARHGAP35Q9NRY4 1499 aa18.8■□□□□ 0.6
TCF4-289ENST00000637941 DNAJC5BQ9UF47 199 aa18.79■□□□□ 0.6
TCF4-289ENST00000637941 DNMBPQ6XZF7 1577 aa18.78■□□□□ 0.6
TCF4-289ENST00000637941 CUX2O14529 1486 aa18.77■□□□□ 0.6
TCF4-289ENST00000637941 MAP3K1Q13233 1512 aa18.77■□□□□ 0.6
TCF4-289ENST00000637941 DHX57Q6P158 1386 aaKnown RBP18.74■□□□□ 0.59
TCF4-289ENST00000637941 PDS5BQ9NTI5 1447 aa18.74■□□□□ 0.59
TCF4-289ENST00000637941 TOPBP1Q92547 1522 aa18.73■□□□□ 0.59
TCF4-289ENST00000637941 IGF1RP08069 1367 aa18.72■□□□□ 0.59
TCF4-289ENST00000637941 KANK4Q5T7N3 995 aaPredicted RBP18.72■□□□□ 0.59
TCF4-289ENST00000637941 CCNB3Q8WWL7 1395 aa18.71■□□□□ 0.59
TCF4-289ENST00000637941 GTF3C3Q9Y5Q9 886 aa18.7■□□□□ 0.58
TCF4-289ENST00000637941 TIAM1Q13009 1591 aa18.69■□□□□ 0.58
TCF4-289ENST00000637941 CARMIL1Q5VZK9 1371 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms