RNA–Protein interactions for RNA: ENST00000637535.1

CACNB4-256, Transcript of calcium voltage-gated channel auxiliary subunit beta 4, human

TSL 5

Gene CACNB4, Length 1,731 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNB4-256	ENST00000637535	AEBP2	Q6ZN18	517 aa	Predicted RBP	17.84	■□□□□ 0.45
CACNB4-256	ENST00000637535	CHIC1	Q5VXU3	224 aa		17.3	■□□□□ 0.36
CACNB4-256	ENST00000637535	NISCH	Q9Y2I1	1504 aa		16.25	■□□□□ 0.19
CACNB4-256	ENST00000637535	PHF23	Q9BUL5	403 aa	Predicted RBP	15.23	■□□□□ 0.03
CACNB4-256	ENST00000637535	SENP3	Q9H4L4	574 aa	Predicted RBP	15.12	■□□□□ 0.01
CACNB4-256	ENST00000637535	ABCC9	O60706	1549 aa		14.92	□□□□□ -0.02
CACNB4-256	ENST00000637535	POTED	Q86YR6	584 aa		14.8	□□□□□ -0.04
CACNB4-256	ENST00000637535	CCDC180	Q9P1Z9	1646 aa		14.58	□□□□□ -0.08
CACNB4-256	ENST00000637535	DNAJC5B	Q9UF47	199 aa		14.2	□□□□□ -0.14
CACNB4-256	ENST00000637535	FOXD1	Q16676	465 aa		14.07	□□□□□ -0.16
CACNB4-256	ENST00000637535	DCAF8L2	P0C7V8	631 aa		14.01	□□□□□ -0.17
CACNB4-256	ENST00000637535	PLPPR3	Q6T4P5	718 aa		14	□□□□□ -0.17
CACNB4-256	ENST00000637535	RB1CC1	Q8TDY2	1594 aa		14	□□□□□ -0.17
CACNB4-256	ENST00000637535	PABPN1	Q86U42	306 aa	Known RBP eCLIP	13.93	□□□□□ -0.18
CACNB4-256	ENST00000637535	NACAD	O15069	1562 aa		13.83	□□□□□ -0.19
CACNB4-256	ENST00000637535	UNC13A	Q9UPW8	1703 aa		13.78	□□□□□ -0.2
CACNB4-256	ENST00000637535	BICRA	Q9NZM4	1560 aa		13.65	□□□□□ -0.22
CACNB4-256	ENST00000637535	MYO15B	Q96JP2	1530 aa		13.5	□□□□□ -0.25
CACNB4-256	ENST00000637535	PPP6R1	Q9UPN7	881 aa		13.49	□□□□□ -0.25
CACNB4-256	ENST00000637535	ADRA2B	P18089	450 aa		13.44	□□□□□ -0.26
CACNB4-256	ENST00000637535	SCRIB	Q14160	1630 aa		13.43	□□□□□ -0.26
CACNB4-256	ENST00000637535	ZCCHC6	Q5VYS8	1495 aa	Known RBP	13.42	□□□□□ -0.26
CACNB4-256	ENST00000637535	CC2D2A	Q9P2K1	1620 aa		13.42	□□□□□ -0.26
CACNB4-256	ENST00000637535	CECR2	Q9BXF3	1484 aa		13.4	□□□□□ -0.26
CACNB4-256	ENST00000637535	EIF4G1	Q04637	1599 aa	Known RBP	13.33	□□□□□ -0.28
CACNB4-256	ENST00000637535	DCAF1	Q9Y4B6	1507 aa		13.3	□□□□□ -0.28
CACNB4-256	ENST00000637535	SHROOM4	Q9ULL8	1493 aa		13.26	□□□□□ -0.29
CACNB4-256	ENST00000637535	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.23	□□□□□ -0.29
CACNB4-256	ENST00000637535	DNAJC5	Q9H3Z4	198 aa		13.05	□□□□□ -0.32
CACNB4-256	ENST00000637535	MSH5	O43196	834 aa		12.99	□□□□□ -0.33
CACNB4-256	ENST00000637535	ERCC6	Q03468	1493 aa		12.85	□□□□□ -0.35
CACNB4-256	ENST00000637535	NES	P48681	1621 aa		12.79	□□□□□ -0.36
CACNB4-256	ENST00000637535	NCAPD3	P42695	1498 aa		12.79	□□□□□ -0.36
CACNB4-256	ENST00000637535	ATAD2B	Q9ULI0	1458 aa		12.78	□□□□□ -0.36
CACNB4-256	ENST00000637535	CUX2	O14529	1486 aa		12.78	□□□□□ -0.36
CACNB4-256	ENST00000637535	SMARCA4	P51532	1647 aa		12.72	□□□□□ -0.37
CACNB4-256	ENST00000637535	SMARCA2	P51531	1590 aa		12.68	□□□□□ -0.38
CACNB4-256	ENST00000637535	HMGXB3	Q12766	1538 aa		12.66	□□□□□ -0.38
CACNB4-256	ENST00000637535	BAZ1B	Q9UIG0	1483 aa	Known RBP	12.65	□□□□□ -0.38
CACNB4-256	ENST00000637535	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	12.6	□□□□□ -0.39
CACNB4-256	ENST00000637535	THOC2	Q8NI27	1593 aa	Known RBP	12.6	□□□□□ -0.39
CACNB4-256	ENST00000637535	MROH2B	Q7Z745	1585 aa		12.59	□□□□□ -0.39
CACNB4-256	ENST00000637535	KIF21A	Q7Z4S6	1674 aa		12.59	□□□□□ -0.39
CACNB4-256	ENST00000637535	TRIM41	Q8WV44	630 aa		12.54	□□□□□ -0.4
CACNB4-256	ENST00000637535	PEG3	Q9GZU2	1588 aa		12.52	□□□□□ -0.4
CACNB4-256	ENST00000637535	LAMC3	Q9Y6N6	1575 aa		12.52	□□□□□ -0.4
CACNB4-256	ENST00000637535	PDS5B	Q9NTI5	1447 aa		12.47	□□□□□ -0.41
CACNB4-256	ENST00000637535	WIZ	O95785	1651 aa		12.46	□□□□□ -0.42
CACNB4-256	ENST00000637535	CADPS	Q9ULU8	1353 aa		12.43	□□□□□ -0.42
CACNB4-256	ENST00000637535	MRC2	Q9UBG0	1479 aa		12.39	□□□□□ -0.43
CACNB4-256	ENST00000637535	WDR62	O43379	1518 aa		12.35	□□□□□ -0.43
CACNB4-256	ENST00000637535	CEP164	Q9UPV0	1460 aa		12.32	□□□□□ -0.44
CACNB4-256	ENST00000637535	PPP4R3CP	Q6ZMV5	832 aa		12.32	□□□□□ -0.44
CACNB4-256	ENST00000637535	FANCD2	Q9BXW9	1451 aa		12.32	□□□□□ -0.44
CACNB4-256	ENST00000637535	SCAF1	Q9H7N4	1312 aa	Known RBP	12.28	□□□□□ -0.44
CACNB4-256	ENST00000637535	OSCAR	Q8IYS5	282 aa		12.25	□□□□□ -0.45
CACNB4-256	ENST00000637535	URB2	Q14146	1524 aa	Known RBP	12.24	□□□□□ -0.45
CACNB4-256	ENST00000637535	CFTR	P13569	1480 aa		12.24	□□□□□ -0.45
CACNB4-256	ENST00000637535	RSF1	Q96T23	1441 aa	Predicted RBP	12.24	□□□□□ -0.45
CACNB4-256	ENST00000637535	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.24	□□□□□ -0.45
CACNB4-256	ENST00000637535	PELP1	Q8IZL8	1130 aa	Known RBP	12.23	□□□□□ -0.45
CACNB4-256	ENST00000637535	TOP2A	P11388	1531 aa	Known RBP	12.19	□□□□□ -0.46
CACNB4-256	ENST00000637535	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.16	□□□□□ -0.46
CACNB4-256	ENST00000637535	RIMBP3C	A6NJZ7	1639 aa		12.13	□□□□□ -0.47
CACNB4-256	ENST00000637535	RIMBP3B	A6NNM3	1639 aa		12.13	□□□□□ -0.47
CACNB4-256	ENST00000637535	RIMBP3	Q9UFD9	1639 aa		12.13	□□□□□ -0.47
CACNB4-256	ENST00000637535	CCDC88B	A6NC98	1476 aa		12.11	□□□□□ -0.47
CACNB4-256	ENST00000637535	PRDM2	Q13029	1718 aa		12.1	□□□□□ -0.47
CACNB4-256	ENST00000637535	CYB5RL	Q6IPT4	315 aa		12.07	□□□□□ -0.48
CACNB4-256	ENST00000637535	ARHGEF11	O15085	1522 aa		12.06	□□□□□ -0.48
CACNB4-256	ENST00000637535	TOPBP1	Q92547	1522 aa		12.06	□□□□□ -0.48
CACNB4-256	ENST00000637535	IFT140	Q96RY7	1462 aa		12.06	□□□□□ -0.48
CACNB4-256	ENST00000637535	DMRT2	Q9Y5R5	561 aa		12.06	□□□□□ -0.48
CACNB4-256	ENST00000637535	FBLN2	P98095	1184 aa		12.05	□□□□□ -0.48
CACNB4-256	ENST00000637535	AQR	O60306	1485 aa	Known RBP eCLIP	12.04	□□□□□ -0.48
CACNB4-256	ENST00000637535	EIF4G3	O43432	1585 aa	Known RBP	12.03	□□□□□ -0.48
CACNB4-256	ENST00000637535	MYT1	Q01538	1121 aa		12.01	□□□□□ -0.49
CACNB4-256	ENST00000637535	CHD1	O14646	1710 aa		12.01	□□□□□ -0.49
CACNB4-256	ENST00000637535	CNKSR2	Q8WXI2	1034 aa		12	□□□□□ -0.49
CACNB4-256	ENST00000637535	TRH	P20396	242 aa	Predicted RBP	12	□□□□□ -0.49
CACNB4-256	ENST00000637535	DNMBP	Q6XZF7	1577 aa		11.97	□□□□□ -0.49
CACNB4-256	ENST00000637535	RAD54L2	Q9Y4B4	1467 aa		11.97	□□□□□ -0.49
CACNB4-256	ENST00000637535	TARBP1	Q13395	1621 aa	Known RBP	11.96	□□□□□ -0.5
CACNB4-256	ENST00000637535	TDRD9	Q8NDG6	1382 aa	Known RBP	11.95	□□□□□ -0.5
CACNB4-256	ENST00000637535	NCBP3	Q53F19	620 aa	Known RBP	11.94	□□□□□ -0.5
CACNB4-256	ENST00000637535	POLA1	P09884	1462 aa	Predicted RBP	11.94	□□□□□ -0.5
CACNB4-256	ENST00000637535	KCNA4	P22459	653 aa		11.94	□□□□□ -0.5
CACNB4-256	ENST00000637535	ARAP1	Q96P48	1450 aa		11.93	□□□□□ -0.5
CACNB4-256	ENST00000637535	ABCC8	Q09428	1581 aa		11.93	□□□□□ -0.5
CACNB4-256	ENST00000637535	SOGA1	O94964	1423 aa		11.88	□□□□□ -0.51
CACNB4-256	ENST00000637535	SNAPC4	Q5SXM2	1469 aa		11.86	□□□□□ -0.51
CACNB4-256	ENST00000637535	FGD5	Q6ZNL6	1462 aa		11.85	□□□□□ -0.51
CACNB4-256	ENST00000637535	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.85	□□□□□ -0.51
CACNB4-256	ENST00000637535	CUX1	P39880	1505 aa		11.82	□□□□□ -0.52
CACNB4-256	ENST00000637535	NPM3	O75607	178 aa	Known RBP	11.8	□□□□□ -0.52
CACNB4-256	ENST00000637535	CLASP1	Q7Z460	1538 aa		11.8	□□□□□ -0.52
CACNB4-256	ENST00000637535	RNF216	Q9NWF9	866 aa	Predicted RBP	11.8	□□□□□ -0.52
CACNB4-256	ENST00000637535	HOXD11	P31277	338 aa	Predicted RBP	11.79	□□□□□ -0.52
CACNB4-256	ENST00000637535	SYNJ1	O43426	1573 aa		11.76	□□□□□ -0.53
CACNB4-256	ENST00000637535	GRIN2B	Q13224	1484 aa		11.76	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 117.2 ms