RNA–Protein interactions for RNA: ENST00000636945.2

SCN8A-212, Transcript of sodium voltage-gated channel alpha subunit 8, humanhuman

TSL 5

Gene SCN8A, Length 3,578 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN8A-212ENST00000636945 NISCHQ9Y2I1 1504 aa14.93□□□□□ -0.02
SCN8A-212ENST00000636945 HRCP23327 699 aa13.25□□□□□ -0.29
SCN8A-212ENST00000636945 CCDC180Q9P1Z9 1646 aa13.02□□□□□ -0.33
SCN8A-212ENST00000636945 MYO15BQ96JP2 1530 aa12.97□□□□□ -0.33
SCN8A-212ENST00000636945 PELP1Q8IZL8 1130 aaKnown RBP12.86□□□□□ -0.35
SCN8A-212ENST00000636945 DCAF1Q9Y4B6 1507 aa12.83□□□□□ -0.36
SCN8A-212ENST00000636945 ABCC9O60706 1549 aa12.82□□□□□ -0.36
SCN8A-212ENST00000636945 CHIC1Q5VXU3 224 aa12.81□□□□□ -0.36
SCN8A-212ENST00000636945 SHROOM4Q9ULL8 1493 aa12.8□□□□□ -0.36
SCN8A-212ENST00000636945 PPARGC1BQ86YN6 1023 aaKnown RBP12.78□□□□□ -0.36
SCN8A-212ENST00000636945 ZCCHC6Q5VYS8 1495 aaKnown RBP12.77□□□□□ -0.37
SCN8A-212ENST00000636945 PCGF6Q9BYE7 350 aa12.76□□□□□ -0.37
SCN8A-212ENST00000636945 SUPT5HO00267 1087 aaKnown RBP12.74□□□□□ -0.37
SCN8A-212ENST00000636945 TRIM26Q12899 539 aaPredicted RBP12.51□□□□□ -0.41
SCN8A-212ENST00000636945 SCAF1Q9H7N4 1312 aaKnown RBP12.5□□□□□ -0.41
SCN8A-212ENST00000636945 ZEB1P37275 1124 aaPredicted RBP12.46□□□□□ -0.41
SCN8A-212ENST00000636945 DCAF8L2P0C7V8 631 aa12.44□□□□□ -0.42
SCN8A-212ENST00000636945 MYT1Q01538 1121 aa12.39□□□□□ -0.43
SCN8A-212ENST00000636945 LOC105371045A0A1W2PR82 267 aa12.35□□□□□ -0.43
SCN8A-212ENST00000636945 RB1CC1Q8TDY2 1594 aa12.3□□□□□ -0.44
SCN8A-212ENST00000636945 NACADO15069 1562 aa12.29□□□□□ -0.44
SCN8A-212ENST00000636945 ACIN1Q9UKV3 1341 aaKnown RBP12.2□□□□□ -0.46
SCN8A-212ENST00000636945 NEUROD1Q13562 356 aa12.11□□□□□ -0.47
SCN8A-212ENST00000636945 PABPN1Q86U42 306 aaKnown RBP eCLIP12.03□□□□□ -0.48
SCN8A-212ENST00000636945 GTF3C3Q9Y5Q9 886 aa12□□□□□ -0.49
SCN8A-212ENST00000636945 RSF1Q96T23 1441 aaPredicted RBP11.98□□□□□ -0.49
SCN8A-212ENST00000636945 CENPBP07199 599 aaPredicted RBP11.95□□□□□ -0.5
SCN8A-212ENST00000636945 SCRIBQ14160 1630 aa11.92□□□□□ -0.5
SCN8A-212ENST00000636945 UNC13AQ9UPW8 1703 aa11.92□□□□□ -0.5
SCN8A-212ENST00000636945 TRIM41Q8WV44 630 aa11.9□□□□□ -0.5
SCN8A-212ENST00000636945 DIEXFQ68CQ4 756 aaKnown RBP11.9□□□□□ -0.5
SCN8A-212ENST00000636945 BICRAQ9NZM4 1560 aa11.89□□□□□ -0.51
SCN8A-212ENST00000636945 WRNQ14191 1432 aaPredicted RBP eCLIP11.84□□□□□ -0.51
SCN8A-212ENST00000636945 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.82□□□□□ -0.52
SCN8A-212ENST00000636945 EIF4G1Q04637 1599 aaKnown RBP11.79□□□□□ -0.52
SCN8A-212ENST00000636945 CCER1Q8TC90 406 aaPredicted RBP11.79□□□□□ -0.52
SCN8A-212ENST00000636945 DNAJC5BQ9UF47 199 aa11.78□□□□□ -0.52
SCN8A-212ENST00000636945 ZNF316A6NFI3 1004 aaPredicted RBP11.72□□□□□ -0.53
SCN8A-212ENST00000636945 TTBK1Q5TCY1 1321 aaPredicted RBP11.71□□□□□ -0.54
SCN8A-212ENST00000636945 FAM9AQ8IZU1 332 aaPredicted RBP11.71□□□□□ -0.54
SCN8A-212ENST00000636945 CLSPNQ9HAW4 1339 aa11.65□□□□□ -0.54
SCN8A-212ENST00000636945 MROH2BQ7Z745 1585 aa11.61□□□□□ -0.55
SCN8A-212ENST00000636945 MIER1Q8N108 512 aa11.6□□□□□ -0.55
SCN8A-212ENST00000636945 BAZ1AQ9NRL2 1556 aaPredicted RBP11.6□□□□□ -0.55
SCN8A-212ENST00000636945 CEP162Q5TB80 1403 aa11.59□□□□□ -0.55
SCN8A-212ENST00000636945 TNIKQ9UKE5 1360 aa11.58□□□□□ -0.56
SCN8A-212ENST00000636945 CECR2Q9BXF3 1484 aa11.56□□□□□ -0.56
SCN8A-212ENST00000636945 WIZO95785 1651 aa11.56□□□□□ -0.56
SCN8A-212ENST00000636945 CC2D2AQ9P2K1 1620 aa11.55□□□□□ -0.56
SCN8A-212ENST00000636945 ANP32EQ9BTT0 268 aa11.51□□□□□ -0.57
SCN8A-212ENST00000636945 EEA1Q15075 1411 aa11.5□□□□□ -0.57
SCN8A-212ENST00000636945 SUPT16HQ9Y5B9 1047 aaKnown RBP11.5□□□□□ -0.57
SCN8A-212ENST00000636945 YTHDC1Q96MU7 727 aaKnown RBP11.5□□□□□ -0.57
SCN8A-212ENST00000636945 EHMT2Q96KQ7 1210 aa11.49□□□□□ -0.57
SCN8A-212ENST00000636945 CCDC88BA6NC98 1476 aa11.49□□□□□ -0.57
SCN8A-212ENST00000636945 TSHZ2Q9NRE2 1034 aa11.47□□□□□ -0.57
SCN8A-212ENST00000636945 BCL11AQ9H165 835 aa11.46□□□□□ -0.58
SCN8A-212ENST00000636945 ABCC8Q09428 1581 aa11.45□□□□□ -0.58
SCN8A-212ENST00000636945 TOP2AP11388 1531 aaKnown RBP11.43□□□□□ -0.58
SCN8A-212ENST00000636945 SOGA1O94964 1423 aa11.41□□□□□ -0.58
SCN8A-212ENST00000636945 GOLGA3Q08378 1498 aa11.4□□□□□ -0.58
SCN8A-212ENST00000636945 SMARCA4P51532 1647 aa11.39□□□□□ -0.59
SCN8A-212ENST00000636945 SMARCA2P51531 1590 aa11.38□□□□□ -0.59
SCN8A-212ENST00000636945 KIF21BO75037 1637 aa11.38□□□□□ -0.59
SCN8A-212ENST00000636945 ATAD2BQ9ULI0 1458 aa11.37□□□□□ -0.59
SCN8A-212ENST00000636945 NCAPD3P42695 1498 aa11.36□□□□□ -0.59
SCN8A-212ENST00000636945 RUSC2Q8N2Y8 1516 aa11.35□□□□□ -0.59
SCN8A-212ENST00000636945 CSRNP3Q8WYN3 585 aa11.34□□□□□ -0.59
SCN8A-212ENST00000636945 VPS8Q8N3P4 1428 aa11.32□□□□□ -0.6
SCN8A-212ENST00000636945 DHX57Q6P158 1386 aaKnown RBP11.31□□□□□ -0.6
SCN8A-212ENST00000636945 CLIP1P30622 1438 aa11.3□□□□□ -0.6
SCN8A-212ENST00000636945 CUX2O14529 1486 aa11.3□□□□□ -0.6
SCN8A-212ENST00000636945 BAZ1BQ9UIG0 1483 aaKnown RBP11.3□□□□□ -0.6
SCN8A-212ENST00000636945 CEP164Q9UPV0 1460 aa11.29□□□□□ -0.6
SCN8A-212ENST00000636945 HMGXB3Q12766 1538 aa11.27□□□□□ -0.61
SCN8A-212ENST00000636945 PEG3Q9GZU2 1588 aa11.26□□□□□ -0.61
SCN8A-212ENST00000636945 HNRNPUL2Q1KMD3 747 aaKnown RBP11.24□□□□□ -0.61
SCN8A-212ENST00000636945 UBTFP17480 764 aaKnown RBP11.2□□□□□ -0.62
SCN8A-212ENST00000636945 RRBP1Q9P2E9 1410 aaKnown RBP11.19□□□□□ -0.62
SCN8A-212ENST00000636945 SYNJ1O43426 1573 aa11.17□□□□□ -0.62
SCN8A-212ENST00000636945 RBM19Q9Y4C8 960 aaKnown RBP11.16□□□□□ -0.62
SCN8A-212ENST00000636945 RAPGEF2Q9Y4G8 1499 aa11.13□□□□□ -0.63
SCN8A-212ENST00000636945 MAPKBP1O60336 1514 aa11.12□□□□□ -0.63
SCN8A-212ENST00000636945 MSH5O43196 834 aa11.11□□□□□ -0.63
SCN8A-212ENST00000636945 KCNH8Q96L42 1107 aa11.11□□□□□ -0.63
SCN8A-212ENST00000636945 FANCIQ9NVI1 1328 aa11.11□□□□□ -0.63
SCN8A-212ENST00000636945 ARAP1Q96P48 1450 aa11.1□□□□□ -0.63
SCN8A-212ENST00000636945 ERICH3Q5RHP9 1530 aa11.1□□□□□ -0.63
SCN8A-212ENST00000636945 NESP48681 1621 aa11.08□□□□□ -0.64
SCN8A-212ENST00000636945 FKBP8Q14318 412 aa11.07□□□□□ -0.64
SCN8A-212ENST00000636945 ERCC6Q03468 1493 aa11.07□□□□□ -0.64
SCN8A-212ENST00000636945 CADPSQ9ULU8 1353 aa11.06□□□□□ -0.64
SCN8A-212ENST00000636945 PRXQ9BXM0 1461 aa11.05□□□□□ -0.64
SCN8A-212ENST00000636945 PPP1R15AO75807 674 aaPredicted RBP11.05□□□□□ -0.64
SCN8A-212ENST00000636945 CCER2I3L3R5 266 aa11.04□□□□□ -0.64
SCN8A-212ENST00000636945 LAMC3Q9Y6N6 1575 aa11.03□□□□□ -0.64
SCN8A-212ENST00000636945 TOP2BQ02880 1626 aa11.03□□□□□ -0.64
SCN8A-212ENST00000636945 APLP2Q06481 763 aa11.02□□□□□ -0.65
SCN8A-212ENST00000636945 PDS5BQ9NTI5 1447 aa11.02□□□□□ -0.65
SCN8A-212ENST00000636945 BIVM-ERCC5R4GMW8 1640 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms