RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 NISCHQ9Y2I1 1504 aa22.36■■□□□ 1.17
UPF3A-212ENST00000619079 CCDC180Q9P1Z9 1646 aa19.7■□□□□ 0.74
UPF3A-212ENST00000619079 ABCC9O60706 1549 aa19.18■□□□□ 0.66
UPF3A-212ENST00000619079 DCAF8L2P0C7V8 631 aa18.8■□□□□ 0.6
UPF3A-212ENST00000619079 ZCCHC6Q5VYS8 1495 aaKnown RBP18.67■□□□□ 0.58
UPF3A-212ENST00000619079 NACADO15069 1562 aa18.5■□□□□ 0.55
UPF3A-212ENST00000619079 RB1CC1Q8TDY2 1594 aa18.48■□□□□ 0.55
UPF3A-212ENST00000619079 DCAF1Q9Y4B6 1507 aa18.45■□□□□ 0.54
UPF3A-212ENST00000619079 MYO15BQ96JP2 1530 aa18.42■□□□□ 0.54
UPF3A-212ENST00000619079 HRCP23327 699 aa18.21■□□□□ 0.51
UPF3A-212ENST00000619079 SCRIBQ14160 1630 aa18.11■□□□□ 0.49
UPF3A-212ENST00000619079 PABPN1Q86U42 306 aaKnown RBP eCLIP18.01■□□□□ 0.47
UPF3A-212ENST00000619079 UNC13AQ9UPW8 1703 aa17.99■□□□□ 0.47
UPF3A-212ENST00000619079 SHROOM4Q9ULL8 1493 aa17.99■□□□□ 0.47
UPF3A-212ENST00000619079 BICRAQ9NZM4 1560 aa17.87■□□□□ 0.45
UPF3A-212ENST00000619079 PELP1Q8IZL8 1130 aaKnown RBP17.87■□□□□ 0.45
UPF3A-212ENST00000619079 SUPT5HO00267 1087 aaKnown RBP17.69■□□□□ 0.42
UPF3A-212ENST00000619079 PCGF6Q9BYE7 350 aa17.67■□□□□ 0.42
UPF3A-212ENST00000619079 PPARGC1BQ86YN6 1023 aaKnown RBP17.57■□□□□ 0.4
UPF3A-212ENST00000619079 CHIC1Q5VXU3 224 aa17.55■□□□□ 0.4
UPF3A-212ENST00000619079 EIF4G1Q04637 1599 aaKnown RBP17.43■□□□□ 0.38
UPF3A-212ENST00000619079 CECR2Q9BXF3 1484 aa17.42■□□□□ 0.38
UPF3A-212ENST00000619079 DNAJC5BQ9UF47 199 aa17.35■□□□□ 0.37
UPF3A-212ENST00000619079 BAZ1AQ9NRL2 1556 aaPredicted RBP17.33■□□□□ 0.36
UPF3A-212ENST00000619079 CC2D2AQ9P2K1 1620 aa17.3■□□□□ 0.36
UPF3A-212ENST00000619079 SMARCA4P51532 1647 aa17.29■□□□□ 0.36
UPF3A-212ENST00000619079 ZEB1P37275 1124 aaPredicted RBP17.28■□□□□ 0.36
UPF3A-212ENST00000619079 MYT1Q01538 1121 aa17.28■□□□□ 0.36
UPF3A-212ENST00000619079 TRIM26Q12899 539 aaPredicted RBP17.26■□□□□ 0.35
UPF3A-212ENST00000619079 MROH2BQ7Z745 1585 aa17.25■□□□□ 0.35
UPF3A-212ENST00000619079 RSF1Q96T23 1441 aaPredicted RBP17.16■□□□□ 0.34
UPF3A-212ENST00000619079 ATAD2BQ9ULI0 1458 aa17.15■□□□□ 0.34
UPF3A-212ENST00000619079 SCAF1Q9H7N4 1312 aaKnown RBP17.14■□□□□ 0.33
UPF3A-212ENST00000619079 SMARCA2P51531 1590 aa17.14■□□□□ 0.33
UPF3A-212ENST00000619079 NCAPD3P42695 1498 aa17.08■□□□□ 0.32
UPF3A-212ENST00000619079 WIZO95785 1651 aa17.08■□□□□ 0.32
UPF3A-212ENST00000619079 PEG3Q9GZU2 1588 aa17.07■□□□□ 0.32
UPF3A-212ENST00000619079 BAZ1BQ9UIG0 1483 aaKnown RBP17.07■□□□□ 0.32
UPF3A-212ENST00000619079 HMGXB3Q12766 1538 aa17.01■□□□□ 0.31
UPF3A-212ENST00000619079 LOC105371045A0A1W2PR82 267 aa16.99■□□□□ 0.31
UPF3A-212ENST00000619079 TOP2AP11388 1531 aaKnown RBP16.9■□□□□ 0.3
UPF3A-212ENST00000619079 ACIN1Q9UKV3 1341 aaKnown RBP16.81■□□□□ 0.28
UPF3A-212ENST00000619079 CCDC88BA6NC98 1476 aa16.72■□□□□ 0.27
UPF3A-212ENST00000619079 CENPBP07199 599 aaPredicted RBP16.7■□□□□ 0.26
UPF3A-212ENST00000619079 NEUROD1Q13562 356 aa16.66■□□□□ 0.26
UPF3A-212ENST00000619079 NESP48681 1621 aa16.65■□□□□ 0.26
UPF3A-212ENST00000619079 CADPSQ9ULU8 1353 aa16.64■□□□□ 0.26
UPF3A-212ENST00000619079 GTF3C3Q9Y5Q9 886 aa16.59■□□□□ 0.25
UPF3A-212ENST00000619079 LAMC3Q9Y6N6 1575 aa16.59■□□□□ 0.25
UPF3A-212ENST00000619079 CFTRP13569 1480 aa16.57■□□□□ 0.24
UPF3A-212ENST00000619079 ERCC6Q03468 1493 aa16.54■□□□□ 0.24
UPF3A-212ENST00000619079 PDS5BQ9NTI5 1447 aa16.53■□□□□ 0.24
UPF3A-212ENST00000619079 TRIM41Q8WV44 630 aa16.49■□□□□ 0.23
UPF3A-212ENST00000619079 DIEXFQ68CQ4 756 aaKnown RBP16.48■□□□□ 0.23
UPF3A-212ENST00000619079 FANCD2Q9BXW9 1451 aa16.46■□□□□ 0.23
UPF3A-212ENST00000619079 CCER1Q8TC90 406 aaPredicted RBP16.43■□□□□ 0.22
UPF3A-212ENST00000619079 CEP164Q9UPV0 1460 aa16.42■□□□□ 0.22
UPF3A-212ENST00000619079 KIF21AQ7Z4S6 1674 aa16.4■□□□□ 0.22
UPF3A-212ENST00000619079 PRDM2Q13029 1718 aa16.38■□□□□ 0.21
UPF3A-212ENST00000619079 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.34■□□□□ 0.21
UPF3A-212ENST00000619079 MRC2Q9UBG0 1479 aa16.32■□□□□ 0.2
UPF3A-212ENST00000619079 FAM9AQ8IZU1 332 aaPredicted RBP16.29■□□□□ 0.2
UPF3A-212ENST00000619079 THOC2Q8NI27 1593 aaKnown RBP16.26■□□□□ 0.19
UPF3A-212ENST00000619079 TTBK1Q5TCY1 1321 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-212ENST00000619079 URB2Q14146 1524 aaKnown RBP16.25■□□□□ 0.19
UPF3A-212ENST00000619079 ABCC8Q09428 1581 aa16.22■□□□□ 0.19
UPF3A-212ENST00000619079 WDR62O43379 1518 aa16.22■□□□□ 0.19
UPF3A-212ENST00000619079 WRNQ14191 1432 aaPredicted RBP eCLIP16.21■□□□□ 0.18
UPF3A-212ENST00000619079 TOPBP1Q92547 1522 aa16.2■□□□□ 0.18
UPF3A-212ENST00000619079 ZNF316A6NFI3 1004 aaPredicted RBP16.19■□□□□ 0.18
UPF3A-212ENST00000619079 DNMBPQ6XZF7 1577 aa16.19■□□□□ 0.18
UPF3A-212ENST00000619079 CUX2O14529 1486 aa16.18■□□□□ 0.18
UPF3A-212ENST00000619079 CUX1P39880 1505 aa16.17■□□□□ 0.18
UPF3A-212ENST00000619079 CLSPNQ9HAW4 1339 aa16.12■□□□□ 0.17
UPF3A-212ENST00000619079 SYNJ1O43426 1573 aa16.11■□□□□ 0.17
UPF3A-212ENST00000619079 EHMT2Q96KQ7 1210 aa16.1■□□□□ 0.17
UPF3A-212ENST00000619079 FGD5Q6ZNL6 1462 aa16.1■□□□□ 0.17
UPF3A-212ENST00000619079 POLA1P09884 1462 aaPredicted RBP16.09■□□□□ 0.17
UPF3A-212ENST00000619079 TOP2BQ02880 1626 aa16.08■□□□□ 0.16
UPF3A-212ENST00000619079 YTHDC1Q96MU7 727 aaKnown RBP16.06■□□□□ 0.16
UPF3A-212ENST00000619079 SOGA1O94964 1423 aa16.06■□□□□ 0.16
UPF3A-212ENST00000619079 BIVM-ERCC5R4GMW8 1640 aa16.04■□□□□ 0.16
UPF3A-212ENST00000619079 IFT140Q96RY7 1462 aa16.04■□□□□ 0.16
UPF3A-212ENST00000619079 RAD54L2Q9Y4B4 1467 aa16.04■□□□□ 0.16
UPF3A-212ENST00000619079 MIER1Q8N108 512 aa15.98■□□□□ 0.15
UPF3A-212ENST00000619079 TDRD9Q8NDG6 1382 aaKnown RBP15.97■□□□□ 0.15
UPF3A-212ENST00000619079 ZNF608Q9ULD9 1512 aaPredicted RBP15.97■□□□□ 0.15
UPF3A-212ENST00000619079 TARBP1Q13395 1621 aaKnown RBP15.96■□□□□ 0.14
UPF3A-212ENST00000619079 AQRO60306 1485 aaKnown RBP eCLIP15.93■□□□□ 0.14
UPF3A-212ENST00000619079 ABCA10Q8WWZ4 1543 aa15.93■□□□□ 0.14
UPF3A-212ENST00000619079 CEP162Q5TB80 1403 aa15.9■□□□□ 0.14
UPF3A-212ENST00000619079 ANP32EQ9BTT0 268 aa15.9■□□□□ 0.14
UPF3A-212ENST00000619079 EIF4G3O43432 1585 aaKnown RBP15.88■□□□□ 0.13
UPF3A-212ENST00000619079 GAPVD1Q14C86 1478 aa15.87■□□□□ 0.13
UPF3A-212ENST00000619079 WDR97A6NE52 1622 aa15.86■□□□□ 0.13
UPF3A-212ENST00000619079 KIF27Q86VH2 1401 aa15.85■□□□□ 0.13
UPF3A-212ENST00000619079 TNIKQ9UKE5 1360 aa15.85■□□□□ 0.13
UPF3A-212ENST00000619079 SUPT16HQ9Y5B9 1047 aaKnown RBP15.83■□□□□ 0.12
UPF3A-212ENST00000619079 BCL11AQ9H165 835 aa15.83■□□□□ 0.12
UPF3A-212ENST00000619079 GRIN2BQ13224 1484 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms