RNA–Protein interactions for RNA: ENST00000617246.4

LPP-220, Transcript of LIM domain containing preferred translocation partner in lipoma, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LPP, Length 18,220 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPP-220ENST00000617246 NISCHQ9Y2I1 1504 aa6.16□□□□□ -1.42
LPP-220ENST00000617246 FAM9AQ8IZU1 332 aaPredicted RBP5.94□□□□□ -1.46
LPP-220ENST00000617246 DCAF8L2P0C7V8 631 aa5.87□□□□□ -1.47
LPP-220ENST00000617246 CCDC180Q9P1Z9 1646 aa5.73□□□□□ -1.49
LPP-220ENST00000617246 RB1CC1Q8TDY2 1594 aa5.5□□□□□ -1.53
LPP-220ENST00000617246 ABCC9O60706 1549 aa5.43□□□□□ -1.54
LPP-220ENST00000617246 MYT1LQ9UL68 1186 aa5.36□□□□□ -1.55
LPP-220ENST00000617246 APLP2Q06481 763 aa5.31□□□□□ -1.56
LPP-220ENST00000617246 ERCC6Q03468 1493 aa5.3□□□□□ -1.56
LPP-220ENST00000617246 AEBP2Q6ZN18 517 aaPredicted RBP5.26□□□□□ -1.57
LPP-220ENST00000617246 NACADO15069 1562 aa5.24□□□□□ -1.57
LPP-220ENST00000617246 ESF1Q9H501 851 aaKnown RBP5.23□□□□□ -1.57
LPP-220ENST00000617246 FOXD1Q16676 465 aa5.21□□□□□ -1.57
LPP-220ENST00000617246 SCRIBQ14160 1630 aa5.21□□□□□ -1.58
LPP-220ENST00000617246 NPM1P06748 294 aaKnown RBP eCLIP5.2□□□□□ -1.58
LPP-220ENST00000617246 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.15□□□□□ -1.58
LPP-220ENST00000617246 HNRNPUL2Q1KMD3 747 aaKnown RBP5.15□□□□□ -1.58
LPP-220ENST00000617246 DCAF8L1A6NGE4 600 aa5.12□□□□□ -1.59
LPP-220ENST00000617246 ATP1B4Q9UN42 357 aaPredicted RBP5.11□□□□□ -1.59
LPP-220ENST00000617246 PRDM2Q13029 1718 aa5.08□□□□□ -1.6
LPP-220ENST00000617246 TRHP20396 242 aaPredicted RBP5.06□□□□□ -1.6
LPP-220ENST00000617246 SHROOM4Q9ULL8 1493 aa5.05□□□□□ -1.6
LPP-220ENST00000617246 FBLN2P98095 1184 aa5.04□□□□□ -1.6
LPP-220ENST00000617246 TTBK1Q5TCY1 1321 aaPredicted RBP5.03□□□□□ -1.6
LPP-220ENST00000617246 UNC13AQ9UPW8 1703 aa5.02□□□□□ -1.61
LPP-220ENST00000617246 SMARCA2P51531 1590 aa5.02□□□□□ -1.61
LPP-220ENST00000617246 BCANQ96GW7 911 aa5.01□□□□□ -1.61
LPP-220ENST00000617246 CHIC1Q5VXU3 224 aa4.99□□□□□ -1.61
LPP-220ENST00000617246 BAZ1BQ9UIG0 1483 aaKnown RBP4.98□□□□□ -1.61
LPP-220ENST00000617246 SUPT5HO00267 1087 aaKnown RBP4.96□□□□□ -1.62
LPP-220ENST00000617246 NEFMP07197 916 aa4.95□□□□□ -1.62
LPP-220ENST00000617246 STAG3Q9UJ98 1225 aa4.95□□□□□ -1.62
LPP-220ENST00000617246 PELP1Q8IZL8 1130 aaKnown RBP4.93□□□□□ -1.62
LPP-220ENST00000617246 SUPT6HQ7KZ85 1726 aaKnown RBP4.93□□□□□ -1.62
LPP-220ENST00000617246 TRIM41Q8WV44 630 aa4.92□□□□□ -1.62
LPP-220ENST00000617246 PABPN1Q86U42 306 aaKnown RBP eCLIP4.92□□□□□ -1.62
LPP-220ENST00000617246 HAP1P54257 671 aaPredicted RBP4.92□□□□□ -1.62
LPP-220ENST00000617246 CHMP7Q8WUX9 453 aaPredicted RBP4.92□□□□□ -1.62
LPP-220ENST00000617246 CDK11AQ9UQ88 783 aaPredicted RBP4.92□□□□□ -1.62
LPP-220ENST00000617246 SLC4A1APQ9BWU0 796 aaKnown RBP4.92□□□□□ -1.62
LPP-220ENST00000617246 BAZ1AQ9NRL2 1556 aaPredicted RBP4.92□□□□□ -1.62
LPP-220ENST00000617246 SCAF1Q9H7N4 1312 aaKnown RBP4.92□□□□□ -1.62
LPP-220ENST00000617246 PDS5BQ9NTI5 1447 aa4.91□□□□□ -1.62
LPP-220ENST00000617246 CECR2Q9BXF3 1484 aa4.9□□□□□ -1.62
LPP-220ENST00000617246 ARID4BQ4LE39 1312 aaPredicted RBP4.9□□□□□ -1.62
LPP-220ENST00000617246 NPM2Q86SE8 214 aaKnown RBP4.9□□□□□ -1.63
LPP-220ENST00000617246 CEP164Q9UPV0 1460 aa4.89□□□□□ -1.63
LPP-220ENST00000617246 PLPPR3Q6T4P5 718 aa4.89□□□□□ -1.63
LPP-220ENST00000617246 PHF23Q9BUL5 403 aaPredicted RBP4.88□□□□□ -1.63
LPP-220ENST00000617246 ABCC8Q09428 1581 aa4.87□□□□□ -1.63
LPP-220ENST00000617246 CC2D2AQ9P2K1 1620 aa4.87□□□□□ -1.63
LPP-220ENST00000617246 UBTFP17480 764 aaKnown RBP4.86□□□□□ -1.63
LPP-220ENST00000617246 RANGAP1P46060 587 aaPredicted RBP4.86□□□□□ -1.63
LPP-220ENST00000617246 EHMT2Q96KQ7 1210 aa4.85□□□□□ -1.63
LPP-220ENST00000617246 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.85□□□□□ -1.635e-7■□□□□ 9.5
LPP-220ENST00000617246 SYNJ1O43426 1573 aa4.85□□□□□ -1.63
LPP-220ENST00000617246 C14orf37Q86TY3 774 aa4.85□□□□□ -1.63
LPP-220ENST00000617246 A0A0G2JS52 829 aa4.84□□□□□ -1.63
LPP-220ENST00000617246 MYT1Q01538 1121 aa4.84□□□□□ -1.63
LPP-220ENST00000617246 LAMC3Q9Y6N6 1575 aa4.83□□□□□ -1.64
LPP-220ENST00000617246 CFAP74Q9C0B2 1584 aa4.83□□□□□ -1.64
LPP-220ENST00000617246 CLIP1P30622 1438 aa4.82□□□□□ -1.64
LPP-220ENST00000617246 ZCCHC6Q5VYS8 1495 aaKnown RBP4.82□□□□□ -1.64
LPP-220ENST00000617246 CARMIL2Q6F5E8 1435 aa4.82□□□□□ -1.64
LPP-220ENST00000617246 EIF4G1Q04637 1599 aaKnown RBP4.82□□□□□ -1.64
LPP-220ENST00000617246 KIF21AQ7Z4S6 1674 aa4.81□□□□□ -1.64
LPP-220ENST00000617246 MEX3CQ5U5Q3 659 aaKnown RBP4.8□□□□□ -1.64
LPP-220ENST00000617246 SLC24A1O60721 1099 aa4.8□□□□□ -1.64
LPP-220ENST00000617246 PBRM1Q86U86 1689 aa4.8□□□□□ -1.64
LPP-220ENST00000617246 MYO15BQ96JP2 1530 aa4.79□□□□□ -1.64
LPP-220ENST00000617246 SF3B2Q13435 895 aaKnown RBP4.78□□□□□ -1.64
LPP-220ENST00000617246 PPP1R15AO75807 674 aaPredicted RBP4.78□□□□□ -1.64
LPP-220ENST00000617246 DCAF1Q9Y4B6 1507 aa4.78□□□□□ -1.64
LPP-220ENST00000617246 CTTNBP2Q8WZ74 1663 aa4.77□□□□□ -1.65
LPP-220ENST00000617246 SMARCA4P51532 1647 aa4.77□□□□□ -1.65
LPP-220ENST00000617246 CEP162Q5TB80 1403 aa4.77□□□□□ -1.65
LPP-220ENST00000617246 CFAP43Q8NDM7 1665 aa4.77□□□□□ -1.65
LPP-220ENST00000617246 TSPOAP1O95153 1857 aa4.77□□□□□ -1.65
LPP-220ENST00000617246 NPHP1O15259 732 aa4.76□□□□□ -1.65
LPP-220ENST00000617246 CUX2O14529 1486 aa4.76□□□□□ -1.65
LPP-220ENST00000617246 HDGFP51858 240 aaKnown RBP4.76□□□□□ -1.65
LPP-220ENST00000617246 POGZQ7Z3K3 1410 aa4.76□□□□□ -1.65
LPP-220ENST00000617246 KRI1Q8N9T8 703 aaKnown RBP4.76□□□□□ -1.65
LPP-220ENST00000617246 CCER1Q8TC90 406 aaPredicted RBP4.75□□□□□ -1.65
LPP-220ENST00000617246 TMX4Q9H1E5 349 aaPredicted RBP4.75□□□□□ -1.65
LPP-220ENST00000617246 KANK1Q14678 1352 aa4.75□□□□□ -1.65
LPP-220ENST00000617246 CUL7Q14999 1698 aa4.75□□□□□ -1.65
LPP-220ENST00000617246 GOLGA3Q08378 1498 aa4.74□□□□□ -1.65
LPP-220ENST00000617246 RSF1Q96T23 1441 aaPredicted RBP4.74□□□□□ -1.65
LPP-220ENST00000617246 WASHC2AQ641Q2 1341 aa4.74□□□□□ -1.65
LPP-220ENST00000617246 ZBTB47Q9UFB7 747 aaPredicted RBP4.73□□□□□ -1.65
LPP-220ENST00000617246 HMGB2P26583 209 aaKnown RBP4.73□□□□□ -1.65
LPP-220ENST00000617246 ANO8Q9HCE9 1232 aaPredicted RBP4.72□□□□□ -1.65
LPP-220ENST00000617246 ITSN2Q9NZM3 1697 aa4.72□□□□□ -1.65
LPP-220ENST00000617246 ACIN1Q9UKV3 1341 aaKnown RBP4.72□□□□□ -1.65
LPP-220ENST00000617246 EIF4G2P78344 907 aaKnown RBP eCLIP4.72□□□□□ -1.65
LPP-220ENST00000617246 MRC2Q9UBG0 1479 aa4.71□□□□□ -1.65
LPP-220ENST00000617246 WDR97A6NE52 1622 aa4.71□□□□□ -1.66
LPP-220ENST00000617246 CSRNP3Q8WYN3 585 aa4.71□□□□□ -1.66
LPP-220ENST00000617246 HMGXB3Q12766 1538 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms