RNA–Protein interactions for RNA: ENST00000616383.1

MMP28-206, Transcript of matrix metallopeptidase 28, humanhuman

TSL 3

Gene MMP28, Length 696 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-206ENST00000616383 AEBP2Q6ZN18 517 aaPredicted RBP29.48■■■□□ 2.31
MMP28-206ENST00000616383 CHIC1Q5VXU3 224 aa27.75■■■□□ 2.03
MMP28-206ENST00000616383 NISCHQ9Y2I1 1504 aa25.69■■□□□ 1.7
MMP28-206ENST00000616383 SENP3Q9H4L4 574 aaPredicted RBP25.3■■□□□ 1.64
MMP28-206ENST00000616383 PHF23Q9BUL5 403 aaPredicted RBP24.91■■□□□ 1.58
MMP28-206ENST00000616383 FOXD1Q16676 465 aa23.55■■□□□ 1.36
MMP28-206ENST00000616383 CCDC180Q9P1Z9 1646 aa22.7■■□□□ 1.22
MMP28-206ENST00000616383 MSH5O43196 834 aa22.23■■□□□ 1.15
MMP28-206ENST00000616383 POTEDQ86YR6 584 aa22.14■■□□□ 1.13
MMP28-206ENST00000616383 PLPPR3Q6T4P5 718 aa22.11■■□□□ 1.13
MMP28-206ENST00000616383 PIAS4Q8N2W9 510 aaPredicted RBP22.06■■□□□ 1.12
MMP28-206ENST00000616383 PPP6R1Q9UPN7 881 aa21.78■■□□□ 1.08
MMP28-206ENST00000616383 ADRA2BP18089 450 aa21.77■■□□□ 1.08
MMP28-206ENST00000616383 ABCC9O60706 1549 aa21.61■■□□□ 1.05
MMP28-206ENST00000616383 ZCCHC6Q5VYS8 1495 aaKnown RBP21.54■■□□□ 1.04
MMP28-206ENST00000616383 DCAF1Q9Y4B6 1507 aa21.27■■□□□ 1
MMP28-206ENST00000616383 DCAF8L2P0C7V8 631 aa21.17■□□□□ 0.98
MMP28-206ENST00000616383 MYO15BQ96JP2 1530 aa21.14■□□□□ 0.98
MMP28-206ENST00000616383 NACADO15069 1562 aa21.13■□□□□ 0.97
MMP28-206ENST00000616383 RB1CC1Q8TDY2 1594 aa21.04■□□□□ 0.96
MMP28-206ENST00000616383 SCRIBQ14160 1630 aa20.75■□□□□ 0.91
MMP28-206ENST00000616383 UNC13AQ9UPW8 1703 aa20.7■□□□□ 0.9
MMP28-206ENST00000616383 SHROOM4Q9ULL8 1493 aa20.63■□□□□ 0.89
MMP28-206ENST00000616383 BICRAQ9NZM4 1560 aa20.41■□□□□ 0.86
MMP28-206ENST00000616383 DNAJC5BQ9UF47 199 aa20.32■□□□□ 0.84
MMP28-206ENST00000616383 PABPN1Q86U42 306 aaKnown RBP eCLIP20.22■□□□□ 0.83
MMP28-206ENST00000616383 MAPK8IP2Q13387 824 aaPredicted RBP20.07■□□□□ 0.8
MMP28-206ENST00000616383 SCAF1Q9H7N4 1312 aaKnown RBP20■□□□□ 0.79
MMP28-206ENST00000616383 DMRT2Q9Y5R5 561 aa19.96■□□□□ 0.79
MMP28-206ENST00000616383 CECR2Q9BXF3 1484 aa19.96■□□□□ 0.79
MMP28-206ENST00000616383 BAZ1AQ9NRL2 1556 aaPredicted RBP19.89■□□□□ 0.77
MMP28-206ENST00000616383 SMARCA4P51532 1647 aa19.88■□□□□ 0.77
MMP28-206ENST00000616383 MROH2BQ7Z745 1585 aa19.83■□□□□ 0.77
MMP28-206ENST00000616383 EIF4G1Q04637 1599 aaKnown RBP19.81■□□□□ 0.76
MMP28-206ENST00000616383 RSF1Q96T23 1441 aaPredicted RBP19.76■□□□□ 0.75
MMP28-206ENST00000616383 WIZO95785 1651 aa19.69■□□□□ 0.74
MMP28-206ENST00000616383 SUPT5HO00267 1087 aaKnown RBP19.64■□□□□ 0.73
MMP28-206ENST00000616383 PEG3Q9GZU2 1588 aa19.64■□□□□ 0.73
MMP28-206ENST00000616383 CC2D2AQ9P2K1 1620 aa19.61■□□□□ 0.73
MMP28-206ENST00000616383 SMARCA2P51531 1590 aa19.59■□□□□ 0.73
MMP28-206ENST00000616383 ATAD2BQ9ULI0 1458 aa19.56■□□□□ 0.72
MMP28-206ENST00000616383 TOP2AP11388 1531 aaKnown RBP19.49■□□□□ 0.71
MMP28-206ENST00000616383 HMGXB3Q12766 1538 aa19.46■□□□□ 0.71
MMP28-206ENST00000616383 BAZ1BQ9UIG0 1483 aaKnown RBP19.46■□□□□ 0.71
MMP28-206ENST00000616383 NCAPD3P42695 1498 aa19.44■□□□□ 0.7
MMP28-206ENST00000616383 DCAF8L1A6NGE4 600 aa19.42■□□□□ 0.7
MMP28-206ENST00000616383 CACNB1Q02641 598 aaPredicted RBP19.34■□□□□ 0.69
MMP28-206ENST00000616383 PPP4R3CPQ6ZMV5 832 aa19.34■□□□□ 0.69
MMP28-206ENST00000616383 DNAJC5Q9H3Z4 198 aa19.22■□□□□ 0.67
MMP28-206ENST00000616383 CCDC88BA6NC98 1476 aa19.21■□□□□ 0.67
MMP28-206ENST00000616383 HOXD11P31277 338 aaPredicted RBP19.07■□□□□ 0.64
MMP28-206ENST00000616383 CNKSR2Q8WXI2 1034 aa19.03■□□□□ 0.64
MMP28-206ENST00000616383 PRDM2Q13029 1718 aa19.01■□□□□ 0.63
MMP28-206ENST00000616383 CFTRP13569 1480 aa18.92■□□□□ 0.62
MMP28-206ENST00000616383 RNF216Q9NWF9 866 aaPredicted RBP18.91■□□□□ 0.62
MMP28-206ENST00000616383 LAMC3Q9Y6N6 1575 aa18.9■□□□□ 0.62
MMP28-206ENST00000616383 CADPSQ9ULU8 1353 aa18.89■□□□□ 0.61
MMP28-206ENST00000616383 NESP48681 1621 aa18.87■□□□□ 0.61
MMP28-206ENST00000616383 RNF39Q9H2S5 420 aa18.87■□□□□ 0.61
MMP28-206ENST00000616383 KIF21AQ7Z4S6 1674 aa18.76■□□□□ 0.59
MMP28-206ENST00000616383 ABCC8Q09428 1581 aa18.74■□□□□ 0.59
MMP28-206ENST00000616383 FANCD2Q9BXW9 1451 aa18.72■□□□□ 0.59
MMP28-206ENST00000616383 PDS5BQ9NTI5 1447 aa18.69■□□□□ 0.58
MMP28-206ENST00000616383 CEP164Q9UPV0 1460 aa18.66■□□□□ 0.58
MMP28-206ENST00000616383 SYNJ1O43426 1573 aa18.63■□□□□ 0.57
MMP28-206ENST00000616383 C1QBPQ07021 282 aaKnown RBP18.62■□□□□ 0.57
MMP28-206ENST00000616383 WRNQ14191 1432 aaPredicted RBP eCLIP18.62■□□□□ 0.57
MMP28-206ENST00000616383 BIVM-ERCC5R4GMW8 1640 aa18.61■□□□□ 0.57
MMP28-206ENST00000616383 NCBP3Q53F19 620 aaKnown RBP18.58■□□□□ 0.56
MMP28-206ENST00000616383 TOP2BQ02880 1626 aa18.58■□□□□ 0.56
MMP28-206ENST00000616383 CUX1P39880 1505 aa18.58■□□□□ 0.56
MMP28-206ENST00000616383 ERCC6Q03468 1493 aa18.57■□□□□ 0.56
MMP28-206ENST00000616383 DNMBPQ6XZF7 1577 aa18.55■□□□□ 0.56
MMP28-206ENST00000616383 URB2Q14146 1524 aaKnown RBP18.53■□□□□ 0.56
MMP28-206ENST00000616383 MRC2Q9UBG0 1479 aa18.52■□□□□ 0.56
MMP28-206ENST00000616383 THOC2Q8NI27 1593 aaKnown RBP18.52■□□□□ 0.56
MMP28-206ENST00000616383 TOPBP1Q92547 1522 aa18.5■□□□□ 0.55
MMP28-206ENST00000616383 TRIM41Q8WV44 630 aa18.5■□□□□ 0.55
MMP28-206ENST00000616383 WDR62O43379 1518 aa18.46■□□□□ 0.55
MMP28-206ENST00000616383 FGD5Q6ZNL6 1462 aa18.43■□□□□ 0.54
MMP28-206ENST00000616383 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.38■□□□□ 0.53
MMP28-206ENST00000616383 POLA1P09884 1462 aaPredicted RBP18.38■□□□□ 0.53
MMP28-206ENST00000616383 WDR97A6NE52 1622 aa18.34■□□□□ 0.53
MMP28-206ENST00000616383 CUX2O14529 1486 aa18.34■□□□□ 0.53
MMP28-206ENST00000616383 TARBP1Q13395 1621 aaKnown RBP18.3■□□□□ 0.52
MMP28-206ENST00000616383 RAD54L2Q9Y4B4 1467 aa18.28■□□□□ 0.52
MMP28-206ENST00000616383 SOGA1O94964 1423 aa18.26■□□□□ 0.51
MMP28-206ENST00000616383 ABCA10Q8WWZ4 1543 aa18.24■□□□□ 0.51
MMP28-206ENST00000616383 IFT140Q96RY7 1462 aa18.22■□□□□ 0.51
MMP28-206ENST00000616383 RUSC2Q8N2Y8 1516 aa18.22■□□□□ 0.51
MMP28-206ENST00000616383 NPM3O75607 178 aaKnown RBP18.21■□□□□ 0.51
MMP28-206ENST00000616383 ABCA5Q8WWZ7 1642 aa18.2■□□□□ 0.5
MMP28-206ENST00000616383 EEA1Q15075 1411 aa18.18■□□□□ 0.5
MMP28-206ENST00000616383 KIF27Q86VH2 1401 aa18.17■□□□□ 0.5
MMP28-206ENST00000616383 FAM9AQ8IZU1 332 aaPredicted RBP18.15■□□□□ 0.5
MMP28-206ENST00000616383 PBRM1Q86U86 1689 aa18.15■□□□□ 0.5
MMP28-206ENST00000616383 EIF4G3O43432 1585 aaKnown RBP18.14■□□□□ 0.49
MMP28-206ENST00000616383 ZNF608Q9ULD9 1512 aaPredicted RBP18.12■□□□□ 0.49
MMP28-206ENST00000616383 TDRD9Q8NDG6 1382 aaKnown RBP18.1■□□□□ 0.49
MMP28-206ENST00000616383 GAPVD1Q14C86 1478 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms