RNA–Protein interactions for RNA: ENST00000612467.1

PCDHGA3-202, Transcript of protocadherin gamma subfamily A, 3, humanhuman

TSL 2

Gene PCDHGA3, Length 2,712 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3-202ENST00000612467 NISCHQ9Y2I1 1504 aa29.75■■■□□ 2.35
PCDHGA3-202ENST00000612467 SHROOM4Q9ULL8 1493 aa25.54■■□□□ 1.68
PCDHGA3-202ENST00000612467 CCDC180Q9P1Z9 1646 aa25.25■■□□□ 1.63
PCDHGA3-202ENST00000612467 ZCCHC6Q5VYS8 1495 aaKnown RBP25.1■■□□□ 1.61
PCDHGA3-202ENST00000612467 DCAF8L2P0C7V8 631 aa25.04■■□□□ 1.6
PCDHGA3-202ENST00000612467 SUPT5HO00267 1087 aaKnown RBP24.9■■□□□ 1.58
PCDHGA3-202ENST00000612467 DCAF1Q9Y4B6 1507 aa24.23■■□□□ 1.47
PCDHGA3-202ENST00000612467 CHIC1Q5VXU3 224 aa23.98■■□□□ 1.43
PCDHGA3-202ENST00000612467 MYO15BQ96JP2 1530 aa23.93■■□□□ 1.42
PCDHGA3-202ENST00000612467 SCRIBQ14160 1630 aa23.9■■□□□ 1.42
PCDHGA3-202ENST00000612467 ABCC9O60706 1549 aa23.88■■□□□ 1.41
PCDHGA3-202ENST00000612467 RSF1Q96T23 1441 aaPredicted RBP23.52■■□□□ 1.36
PCDHGA3-202ENST00000612467 NACADO15069 1562 aa23.42■■□□□ 1.34
PCDHGA3-202ENST00000612467 LOC105371045A0A1W2PR82 267 aa23.41■■□□□ 1.34
PCDHGA3-202ENST00000612467 CECR2Q9BXF3 1484 aa23.37■■□□□ 1.33
PCDHGA3-202ENST00000612467 RB1CC1Q8TDY2 1594 aa23.31■■□□□ 1.32
PCDHGA3-202ENST00000612467 MROH2BQ7Z745 1585 aa23.22■■□□□ 1.31
PCDHGA3-202ENST00000612467 PCGF6Q9BYE7 350 aa23.12■■□□□ 1.29
PCDHGA3-202ENST00000612467 WIZO95785 1651 aa23.1■■□□□ 1.29
PCDHGA3-202ENST00000612467 FAM9AQ8IZU1 332 aaPredicted RBP23.08■■□□□ 1.29
PCDHGA3-202ENST00000612467 TRIM41Q8WV44 630 aa23.08■■□□□ 1.28
PCDHGA3-202ENST00000612467 EHMT2Q96KQ7 1210 aa23.03■■□□□ 1.28
PCDHGA3-202ENST00000612467 UNC13AQ9UPW8 1703 aa22.9■■□□□ 1.26
PCDHGA3-202ENST00000612467 PABPN1Q86U42 306 aaKnown RBP eCLIP22.88■■□□□ 1.25
PCDHGA3-202ENST00000612467 HRCP23327 699 aa22.83■■□□□ 1.25
PCDHGA3-202ENST00000612467 BAZ1AQ9NRL2 1556 aaPredicted RBP22.81■■□□□ 1.24
PCDHGA3-202ENST00000612467 SMARCA4P51532 1647 aa22.71■■□□□ 1.23
PCDHGA3-202ENST00000612467 PPARGC1BQ86YN6 1023 aaKnown RBP22.66■■□□□ 1.22
PCDHGA3-202ENST00000612467 BICRAQ9NZM4 1560 aa22.61■■□□□ 1.21
PCDHGA3-202ENST00000612467 TOP2AP11388 1531 aaKnown RBP22.59■■□□□ 1.21
PCDHGA3-202ENST00000612467 CCDC88BA6NC98 1476 aa22.59■■□□□ 1.21
PCDHGA3-202ENST00000612467 EIF4G1Q04637 1599 aaKnown RBP22.59■■□□□ 1.21
PCDHGA3-202ENST00000612467 ABCC8Q09428 1581 aa22.57■■□□□ 1.2
PCDHGA3-202ENST00000612467 TRIM26Q12899 539 aaPredicted RBP22.55■■□□□ 1.2
PCDHGA3-202ENST00000612467 SMARCA2P51531 1590 aa22.53■■□□□ 1.2
PCDHGA3-202ENST00000612467 SOGA1O94964 1423 aa22.3■■□□□ 1.16
PCDHGA3-202ENST00000612467 RUSC2Q8N2Y8 1516 aa22.25■■□□□ 1.15
PCDHGA3-202ENST00000612467 TTBK1Q5TCY1 1321 aaPredicted RBP22.2■■□□□ 1.14
PCDHGA3-202ENST00000612467 ATAD2BQ9ULI0 1458 aa22.19■■□□□ 1.14
PCDHGA3-202ENST00000612467 PEG3Q9GZU2 1588 aa22.17■■□□□ 1.14
PCDHGA3-202ENST00000612467 BAZ1BQ9UIG0 1483 aaKnown RBP22.12■■□□□ 1.13
PCDHGA3-202ENST00000612467 WRNQ14191 1432 aaPredicted RBP eCLIP22.08■■□□□ 1.13
PCDHGA3-202ENST00000612467 CSRNP3Q8WYN3 585 aa22.07■■□□□ 1.12
PCDHGA3-202ENST00000612467 UBTFP17480 764 aaKnown RBP22.05■■□□□ 1.12
PCDHGA3-202ENST00000612467 SYNJ1O43426 1573 aa22.04■■□□□ 1.12
PCDHGA3-202ENST00000612467 CEP162Q5TB80 1403 aa22.02■■□□□ 1.11
PCDHGA3-202ENST00000612467 TNIKQ9UKE5 1360 aa21.91■■□□□ 1.1
PCDHGA3-202ENST00000612467 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.9■■□□□ 1.1
PCDHGA3-202ENST00000612467 RANGAP1P46060 587 aaPredicted RBP21.88■■□□□ 1.09
PCDHGA3-202ENST00000612467 EEA1Q15075 1411 aa21.87■■□□□ 1.09
PCDHGA3-202ENST00000612467 GOLGA3Q08378 1498 aa21.84■■□□□ 1.09
PCDHGA3-202ENST00000612467 ZEB1P37275 1124 aaPredicted RBP21.81■■□□□ 1.08
PCDHGA3-202ENST00000612467 RAPGEF2Q9Y4G8 1499 aa21.73■■□□□ 1.07
PCDHGA3-202ENST00000612467 CCER1Q8TC90 406 aaPredicted RBP21.72■■□□□ 1.07
PCDHGA3-202ENST00000612467 NCAPD3P42695 1498 aa21.72■■□□□ 1.07
PCDHGA3-202ENST00000612467 CEP164Q9UPV0 1460 aa21.71■■□□□ 1.07
PCDHGA3-202ENST00000612467 TOP2BQ02880 1626 aa21.67■■□□□ 1.06
PCDHGA3-202ENST00000612467 HMGXB3Q12766 1538 aa21.66■■□□□ 1.06
PCDHGA3-202ENST00000612467 KIF21BO75037 1637 aa21.66■■□□□ 1.06
PCDHGA3-202ENST00000612467 CLIP1P30622 1438 aa21.64■■□□□ 1.06
PCDHGA3-202ENST00000612467 CUX1P39880 1505 aa21.6■■□□□ 1.05
PCDHGA3-202ENST00000612467 BIVM-ERCC5R4GMW8 1640 aa21.58■■□□□ 1.04
PCDHGA3-202ENST00000612467 CFTRP13569 1480 aa21.52■■□□□ 1.04
PCDHGA3-202ENST00000612467 HNRNPUL2Q1KMD3 747 aaKnown RBP21.51■■□□□ 1.03
PCDHGA3-202ENST00000612467 VPS8Q8N3P4 1428 aa21.47■■□□□ 1.03
PCDHGA3-202ENST00000612467 PRXQ9BXM0 1461 aa21.43■■□□□ 1.02
PCDHGA3-202ENST00000612467 CC2D2AQ9P2K1 1620 aa21.4■■□□□ 1.02
PCDHGA3-202ENST00000612467 APLP2Q06481 763 aa21.4■■□□□ 1.02
PCDHGA3-202ENST00000612467 KIF27Q86VH2 1401 aa21.38■■□□□ 1.01
PCDHGA3-202ENST00000612467 CADPSQ9ULU8 1353 aa21.35■■□□□ 1.01
PCDHGA3-202ENST00000612467 ARAP1Q96P48 1450 aa21.33■■□□□ 1.01
PCDHGA3-202ENST00000612467 ERICH3Q5RHP9 1530 aa21.32■■□□□ 1
PCDHGA3-202ENST00000612467 CUX2O14529 1486 aa21.31■■□□□ 1
PCDHGA3-202ENST00000612467 KANK4Q5T7N3 995 aaPredicted RBP21.31■■□□□ 1
PCDHGA3-202ENST00000612467 PRDM2Q13029 1718 aa21.25■□□□□ 0.99
PCDHGA3-202ENST00000612467 FGD5Q6ZNL6 1462 aa21.25■□□□□ 0.99
PCDHGA3-202ENST00000612467 NESP48681 1621 aa21.24■□□□□ 0.99
PCDHGA3-202ENST00000612467 IGF1RP08069 1367 aa21.23■□□□□ 0.99
PCDHGA3-202ENST00000612467 DNAJC5BQ9UF47 199 aa21.21■□□□□ 0.99
PCDHGA3-202ENST00000612467 ARHGAP35Q9NRY4 1499 aa21.18■□□□□ 0.98
PCDHGA3-202ENST00000612467 FANCD2Q9BXW9 1451 aa21.18■□□□□ 0.98
PCDHGA3-202ENST00000612467 RAD54L2Q9Y4B4 1467 aa21.15■□□□□ 0.98
PCDHGA3-202ENST00000612467 DIEXFQ68CQ4 756 aaKnown RBP21.14■□□□□ 0.98
PCDHGA3-202ENST00000612467 P3H3Q8IVL6 736 aa21.13■□□□□ 0.97
PCDHGA3-202ENST00000612467 CARMIL1Q5VZK9 1371 aa21.13■□□□□ 0.97
PCDHGA3-202ENST00000612467 ITGAEP38570 1179 aa21.08■□□□□ 0.97
PCDHGA3-202ENST00000612467 POLA1P09884 1462 aaPredicted RBP21.02■□□□□ 0.96
PCDHGA3-202ENST00000612467 TOPBP1Q92547 1522 aa21.01■□□□□ 0.95
PCDHGA3-202ENST00000612467 ATP1B4Q9UN42 357 aaPredicted RBP21.01■□□□□ 0.95
PCDHGA3-202ENST00000612467 SCAF1Q9H7N4 1312 aaKnown RBP21■□□□□ 0.95
PCDHGA3-202ENST00000612467 ZNF316A6NFI3 1004 aaPredicted RBP21■□□□□ 0.95
PCDHGA3-202ENST00000612467 DNMBPQ6XZF7 1577 aa20.98■□□□□ 0.95
PCDHGA3-202ENST00000612467 URB2Q14146 1524 aaKnown RBP20.92■□□□□ 0.94
PCDHGA3-202ENST00000612467 DHX57Q6P158 1386 aaKnown RBP20.92■□□□□ 0.94
PCDHGA3-202ENST00000612467 TDRD9Q8NDG6 1382 aaKnown RBP20.91■□□□□ 0.94
PCDHGA3-202ENST00000612467 RRBP1Q9P2E9 1410 aaKnown RBP20.91■□□□□ 0.94
PCDHGA3-202ENST00000612467 FHOD3Q2V2M9 1422 aa20.9■□□□□ 0.94
PCDHGA3-202ENST00000612467 ABCA10Q8WWZ4 1543 aa20.9■□□□□ 0.94
PCDHGA3-202ENST00000612467 CCNB3Q8WWL7 1395 aa20.9■□□□□ 0.94
PCDHGA3-202ENST00000612467 NEUROD1Q13562 356 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms