RNA–Protein interactions for RNA: ENST00000611950.1

PCDHGC3-202, Transcript of protocadherin gamma subfamily C, 3, humanhuman

APPRIS ALT2 BASIC

Gene PCDHGC3, Length 2,849 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-202ENST00000611950 NISCHQ9Y2I1 1504 aa21.92■■□□□ 1.1
PCDHGC3-202ENST00000611950 ABCC9O60706 1549 aa20.02■□□□□ 0.8
PCDHGC3-202ENST00000611950 CCDC180Q9P1Z9 1646 aa19.7■□□□□ 0.74
PCDHGC3-202ENST00000611950 DNAJC5BQ9UF47 199 aa18.95■□□□□ 0.62
PCDHGC3-202ENST00000611950 RB1CC1Q8TDY2 1594 aa18.89■□□□□ 0.61
PCDHGC3-202ENST00000611950 SHROOM4Q9ULL8 1493 aa18.76■□□□□ 0.59
PCDHGC3-202ENST00000611950 DCAF8L2P0C7V8 631 aa18.75■□□□□ 0.59
PCDHGC3-202ENST00000611950 NACADO15069 1562 aa18.68■□□□□ 0.58
PCDHGC3-202ENST00000611950 PELP1Q8IZL8 1130 aaKnown RBP18.64■□□□□ 0.57
PCDHGC3-202ENST00000611950 PABPN1Q86U42 306 aaKnown RBP eCLIP18.63■□□□□ 0.57
PCDHGC3-202ENST00000611950 ZCCHC6Q5VYS8 1495 aaKnown RBP18.54■□□□□ 0.56
PCDHGC3-202ENST00000611950 UNC13AQ9UPW8 1703 aa18.5■□□□□ 0.55
PCDHGC3-202ENST00000611950 MYT1Q01538 1121 aa18.45■□□□□ 0.54
PCDHGC3-202ENST00000611950 SUPT5HO00267 1087 aaKnown RBP18.44■□□□□ 0.54
PCDHGC3-202ENST00000611950 BICRAQ9NZM4 1560 aa18.33■□□□□ 0.53
PCDHGC3-202ENST00000611950 MYO15BQ96JP2 1530 aa18.29■□□□□ 0.52
PCDHGC3-202ENST00000611950 SCRIBQ14160 1630 aa18.03■□□□□ 0.48
PCDHGC3-202ENST00000611950 CC2D2AQ9P2K1 1620 aa18.03■□□□□ 0.48
PCDHGC3-202ENST00000611950 CECR2Q9BXF3 1484 aa18.02■□□□□ 0.48
PCDHGC3-202ENST00000611950 DCAF1Q9Y4B6 1507 aa18.02■□□□□ 0.47
PCDHGC3-202ENST00000611950 EIF4G1Q04637 1599 aaKnown RBP17.92■□□□□ 0.46
PCDHGC3-202ENST00000611950 TTBK1Q5TCY1 1321 aaPredicted RBP17.89■□□□□ 0.45
PCDHGC3-202ENST00000611950 CHIC1Q5VXU3 224 aa17.72■□□□□ 0.43
PCDHGC3-202ENST00000611950 PRKCSHP14314 528 aaPredicted RBP17.65■□□□□ 0.42
PCDHGC3-202ENST00000611950 SLC24A1O60721 1099 aa17.59■□□□□ 0.41
PCDHGC3-202ENST00000611950 DNAJC5Q9H3Z4 198 aa17.53■□□□□ 0.4
PCDHGC3-202ENST00000611950 PCGF6Q9BYE7 350 aa17.53■□□□□ 0.4
PCDHGC3-202ENST00000611950 LOC105371045A0A1W2PR82 267 aa17.43■□□□□ 0.38
PCDHGC3-202ENST00000611950 HRCP23327 699 aa17.38■□□□□ 0.37
PCDHGC3-202ENST00000611950 PPARGC1BQ86YN6 1023 aaKnown RBP17.34■□□□□ 0.37
PCDHGC3-202ENST00000611950 RSF1Q96T23 1441 aaPredicted RBP17.33■□□□□ 0.36
PCDHGC3-202ENST00000611950 ERCC6Q03468 1493 aa17.31■□□□□ 0.36
PCDHGC3-202ENST00000611950 APLP2Q06481 763 aa17.29■□□□□ 0.36
PCDHGC3-202ENST00000611950 CUX2O14529 1486 aa17.26■□□□□ 0.35
PCDHGC3-202ENST00000611950 NCAPD3P42695 1498 aa17.24■□□□□ 0.35
PCDHGC3-202ENST00000611950 EHMT2Q96KQ7 1210 aa17.22■□□□□ 0.35
PCDHGC3-202ENST00000611950 ERICH6Q7L0X2 663 aa17.21■□□□□ 0.35
PCDHGC3-202ENST00000611950 ATAD2BQ9ULI0 1458 aa17.19■□□□□ 0.34
PCDHGC3-202ENST00000611950 FAM9AQ8IZU1 332 aaPredicted RBP17.13■□□□□ 0.33
PCDHGC3-202ENST00000611950 SMARCA4P51532 1647 aa17.13■□□□□ 0.33
PCDHGC3-202ENST00000611950 SMARCA2P51531 1590 aa17.13■□□□□ 0.33
PCDHGC3-202ENST00000611950 NESP48681 1621 aa17.13■□□□□ 0.33
PCDHGC3-202ENST00000611950 HMGXB3Q12766 1538 aa17.1■□□□□ 0.33
PCDHGC3-202ENST00000611950 MROH2BQ7Z745 1585 aa17.05■□□□□ 0.32
PCDHGC3-202ENST00000611950 BAZ1BQ9UIG0 1483 aaKnown RBP17.04■□□□□ 0.32
PCDHGC3-202ENST00000611950 BAZ1AQ9NRL2 1556 aaPredicted RBP17■□□□□ 0.31
PCDHGC3-202ENST00000611950 TRIM41Q8WV44 630 aa16.97■□□□□ 0.31
PCDHGC3-202ENST00000611950 WIZO95785 1651 aa16.95■□□□□ 0.3
PCDHGC3-202ENST00000611950 THOC2Q8NI27 1593 aaKnown RBP16.94■□□□□ 0.3
PCDHGC3-202ENST00000611950 BCL11AQ9H165 835 aa16.92■□□□□ 0.3
PCDHGC3-202ENST00000611950 LAMC3Q9Y6N6 1575 aa16.91■□□□□ 0.3
PCDHGC3-202ENST00000611950 PEG3Q9GZU2 1588 aa16.9■□□□□ 0.3
PCDHGC3-202ENST00000611950 TRIM26Q12899 539 aaPredicted RBP16.89■□□□□ 0.29
PCDHGC3-202ENST00000611950 KIF21AQ7Z4S6 1674 aa16.89■□□□□ 0.29
PCDHGC3-202ENST00000611950 PDS5BQ9NTI5 1447 aa16.84■□□□□ 0.29
PCDHGC3-202ENST00000611950 CADPSQ9ULU8 1353 aa16.74■□□□□ 0.27
PCDHGC3-202ENST00000611950 DAXXQ9UER7 740 aaPredicted RBP16.72■□□□□ 0.27
PCDHGC3-202ENST00000611950 MRC2Q9UBG0 1479 aa16.7■□□□□ 0.26
PCDHGC3-202ENST00000611950 TOP2AP11388 1531 aaKnown RBP16.67■□□□□ 0.26
PCDHGC3-202ENST00000611950 SCAF1Q9H7N4 1312 aaKnown RBP16.67■□□□□ 0.26
PCDHGC3-202ENST00000611950 WDR62O43379 1518 aa16.64■□□□□ 0.25
PCDHGC3-202ENST00000611950 CEP164Q9UPV0 1460 aa16.62■□□□□ 0.25
PCDHGC3-202ENST00000611950 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
PCDHGC3-202ENST00000611950 AEBP2Q6ZN18 517 aaPredicted RBP16.6■□□□□ 0.25
PCDHGC3-202ENST00000611950 FANCD2Q9BXW9 1451 aa16.57■□□□□ 0.24
PCDHGC3-202ENST00000611950 ABCC8Q09428 1581 aa16.55■□□□□ 0.24
PCDHGC3-202ENST00000611950 OSCARQ8IYS5 282 aa16.5■□□□□ 0.23
PCDHGC3-202ENST00000611950 CFTRP13569 1480 aa16.49■□□□□ 0.23
PCDHGC3-202ENST00000611950 PLPPR3Q6T4P5 718 aa16.47■□□□□ 0.23
PCDHGC3-202ENST00000611950 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.47■□□□□ 0.23
PCDHGC3-202ENST00000611950 URB2Q14146 1524 aaKnown RBP16.44■□□□□ 0.22
PCDHGC3-202ENST00000611950 ZEB1P37275 1124 aaPredicted RBP16.43■□□□□ 0.22
PCDHGC3-202ENST00000611950 SOGA1O94964 1423 aa16.38■□□□□ 0.21
PCDHGC3-202ENST00000611950 CCER1Q8TC90 406 aaPredicted RBP16.35■□□□□ 0.21
PCDHGC3-202ENST00000611950 PRDM2Q13029 1718 aa16.33■□□□□ 0.2
PCDHGC3-202ENST00000611950 RUSC2Q8N2Y8 1516 aa16.31■□□□□ 0.2
PCDHGC3-202ENST00000611950 ZNF608Q9ULD9 1512 aaPredicted RBP16.3■□□□□ 0.2
PCDHGC3-202ENST00000611950 RIMBP3CA6NJZ7 1639 aa16.29■□□□□ 0.2
PCDHGC3-202ENST00000611950 RIMBP3BA6NNM3 1639 aa16.29■□□□□ 0.2
PCDHGC3-202ENST00000611950 RIMBP3Q9UFD9 1639 aa16.29■□□□□ 0.2
PCDHGC3-202ENST00000611950 CEP162Q5TB80 1403 aa16.26■□□□□ 0.19
PCDHGC3-202ENST00000611950 WRNQ14191 1432 aaPredicted RBP eCLIP16.26■□□□□ 0.19
PCDHGC3-202ENST00000611950 IFT140Q96RY7 1462 aa16.26■□□□□ 0.19
PCDHGC3-202ENST00000611950 EIF5BO60841 1220 aaKnown RBP16.25■□□□□ 0.19
PCDHGC3-202ENST00000611950 CSRNP3Q8WYN3 585 aa16.24■□□□□ 0.19
PCDHGC3-202ENST00000611950 EEA1Q15075 1411 aa16.24■□□□□ 0.19
PCDHGC3-202ENST00000611950 UBTFP17480 764 aaKnown RBP16.23■□□□□ 0.19
PCDHGC3-202ENST00000611950 TOPBP1Q92547 1522 aa16.23■□□□□ 0.19
PCDHGC3-202ENST00000611950 TNIKQ9UKE5 1360 aa16.23■□□□□ 0.19
PCDHGC3-202ENST00000611950 ARHGEF11O15085 1522 aa16.22■□□□□ 0.19
PCDHGC3-202ENST00000611950 SYNJ1O43426 1573 aa16.21■□□□□ 0.19
PCDHGC3-202ENST00000611950 RANGAP1P46060 587 aaPredicted RBP16.19■□□□□ 0.18
PCDHGC3-202ENST00000611950 EIF4G3O43432 1585 aaKnown RBP16.19■□□□□ 0.18
PCDHGC3-202ENST00000611950 CYB5RLQ6IPT4 315 aa16.18■□□□□ 0.18
PCDHGC3-202ENST00000611950 FBLN2P98095 1184 aa16.16■□□□□ 0.18
PCDHGC3-202ENST00000611950 GOLGA3Q08378 1498 aa16.15■□□□□ 0.18
PCDHGC3-202ENST00000611950 CENPBP07199 599 aaPredicted RBP16.14■□□□□ 0.17
PCDHGC3-202ENST00000611950 DNMBPQ6XZF7 1577 aa16.14■□□□□ 0.17
PCDHGC3-202ENST00000611950 AQRO60306 1485 aaKnown RBP eCLIP16.14■□□□□ 0.17
PCDHGC3-202ENST00000611950 CHD1O14646 1710 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms