RNA–Protein interactions for RNA: ENST00000593912.5

VRK3-204, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 551 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-204ENST00000593912 DNAJC5BQ9UF47 199 aa8.57□□□□□ -1.04
VRK3-204ENST00000593912 ABCC9O60706 1549 aa8.54□□□□□ -1.04
VRK3-204ENST00000593912 NISCHQ9Y2I1 1504 aa8.47□□□□□ -1.05
VRK3-204ENST00000593912 DNAJC5Q9H3Z4 198 aa8.24□□□□□ -1.09
VRK3-204ENST00000593912 CCDC180Q9P1Z9 1646 aa7.86□□□□□ -1.15
VRK3-204ENST00000593912 PABPN1Q86U42 306 aaKnown RBP eCLIP7.84□□□□□ -1.15
VRK3-204ENST00000593912 RB1CC1Q8TDY2 1594 aa7.78□□□□□ -1.16
VRK3-204ENST00000593912 CECR2Q9BXF3 1484 aa7.71□□□□□ -1.18
VRK3-204ENST00000593912 UNC13AQ9UPW8 1703 aa7.71□□□□□ -1.18
VRK3-204ENST00000593912 TRIM41Q8WV44 630 aa7.69□□□□□ -1.18
VRK3-204ENST00000593912 CC2D2AQ9P2K1 1620 aa7.66□□□□□ -1.18
VRK3-204ENST00000593912 BICRAQ9NZM4 1560 aa7.64□□□□□ -1.19
VRK3-204ENST00000593912 AEBP2Q6ZN18 517 aaPredicted RBP7.63□□□□□ -1.19
VRK3-204ENST00000593912 POTEDQ86YR6 584 aa7.58□□□□□ -1.2
VRK3-204ENST00000593912 NACADO15069 1562 aa7.55□□□□□ -1.2
VRK3-204ENST00000593912 CUX2O14529 1486 aa7.53□□□□□ -1.2
VRK3-204ENST00000593912 EIF4G1Q04637 1599 aaKnown RBP7.47□□□□□ -1.21
VRK3-204ENST00000593912 DCAF8L2P0C7V8 631 aa7.45□□□□□ -1.22
VRK3-204ENST00000593912 ERCC6Q03468 1493 aa7.37□□□□□ -1.23
VRK3-204ENST00000593912 SHROOM4Q9ULL8 1493 aa7.33□□□□□ -1.24
VRK3-204ENST00000593912 ILDR1Q86SU0 546 aaPredicted RBP7.22□□□□□ -1.25
VRK3-204ENST00000593912 THOC2Q8NI27 1593 aaKnown RBP7.2□□□□□ -1.26
VRK3-204ENST00000593912 SCRIBQ14160 1630 aa7.2□□□□□ -1.26
VRK3-204ENST00000593912 MYO15BQ96JP2 1530 aa7.19□□□□□ -1.26
VRK3-204ENST00000593912 NESP48681 1621 aa7.18□□□□□ -1.26
VRK3-204ENST00000593912 RIMBP3CA6NJZ7 1639 aa7.14□□□□□ -1.27
VRK3-204ENST00000593912 RIMBP3BA6NNM3 1639 aa7.14□□□□□ -1.27
VRK3-204ENST00000593912 RIMBP3Q9UFD9 1639 aa7.14□□□□□ -1.27
VRK3-204ENST00000593912 BAZ1AQ9NRL2 1556 aaPredicted RBP7.13□□□□□ -1.27
VRK3-204ENST00000593912 SMARCA2P51531 1590 aa7.12□□□□□ -1.27
VRK3-204ENST00000593912 TRHP20396 242 aaPredicted RBP7.12□□□□□ -1.27
VRK3-204ENST00000593912 OSCARQ8IYS5 282 aa7.07□□□□□ -1.28
VRK3-204ENST00000593912 KIF21AQ7Z4S6 1674 aa7.06□□□□□ -1.28
VRK3-204ENST00000593912 ARHGEF11O15085 1522 aa7.02□□□□□ -1.29
VRK3-204ENST00000593912 CYB5RLQ6IPT4 315 aa7□□□□□ -1.29
VRK3-204ENST00000593912 CHIC1Q5VXU3 224 aa6.99□□□□□ -1.29
VRK3-204ENST00000593912 NCAPD3P42695 1498 aa6.98□□□□□ -1.29
VRK3-204ENST00000593912 LAMC3Q9Y6N6 1575 aa6.94□□□□□ -1.3
VRK3-204ENST00000593912 ARAP1Q96P48 1450 aa6.93□□□□□ -1.3
VRK3-204ENST00000593912 WDR62O43379 1518 aa6.92□□□□□ -1.3
VRK3-204ENST00000593912 MRC2Q9UBG0 1479 aa6.91□□□□□ -1.3
VRK3-204ENST00000593912 ATAD2BQ9ULI0 1458 aa6.9□□□□□ -1.31
VRK3-204ENST00000593912 DCAF1Q9Y4B6 1507 aa6.9□□□□□ -1.31
VRK3-204ENST00000593912 PDS5BQ9NTI5 1447 aa6.89□□□□□ -1.31
VRK3-204ENST00000593912 ZCCHC6Q5VYS8 1495 aaKnown RBP6.89□□□□□ -1.31
VRK3-204ENST00000593912 HMGXB3Q12766 1538 aa6.89□□□□□ -1.31
VRK3-204ENST00000593912 BAZ1BQ9UIG0 1483 aaKnown RBP6.8□□□□□ -1.32
VRK3-204ENST00000593912 LMTK3Q96Q04 1460 aa6.79□□□□□ -1.32
VRK3-204ENST00000593912 KDM4FA0A1W2PPD8 638 aa6.78□□□□□ -1.32
VRK3-204ENST00000593912 SMARCA4P51532 1647 aa6.78□□□□□ -1.32
VRK3-204ENST00000593912 CHD1O14646 1710 aa6.77□□□□□ -1.33
VRK3-204ENST00000593912 CEP164Q9UPV0 1460 aa6.76□□□□□ -1.33
VRK3-204ENST00000593912 ILDR2Q71H61 639 aa6.75□□□□□ -1.33
VRK3-204ENST00000593912 ZNF608Q9ULD9 1512 aaPredicted RBP6.75□□□□□ -1.33
VRK3-204ENST00000593912 CADPSQ9ULU8 1353 aa6.74□□□□□ -1.33
VRK3-204ENST00000593912 SOCS7O14512 581 aa6.73□□□□□ -1.33
VRK3-204ENST00000593912 FBXO41Q8TF61 875 aa6.73□□□□□ -1.33
VRK3-204ENST00000593912 ERCC6L2Q5T890 1561 aa6.73□□□□□ -1.33
VRK3-204ENST00000593912 RSF1Q96T23 1441 aaPredicted RBP6.72□□□□□ -1.33
VRK3-204ENST00000593912 URB2Q14146 1524 aaKnown RBP6.71□□□□□ -1.33
VRK3-204ENST00000593912 HECW2Q9P2P5 1572 aa6.71□□□□□ -1.34
VRK3-204ENST00000593912 FANCD2Q9BXW9 1451 aa6.7□□□□□ -1.34
VRK3-204ENST00000593912 EIF4G3O43432 1585 aaKnown RBP6.68□□□□□ -1.34
VRK3-204ENST00000593912 KIF13AQ9H1H9 1805 aa6.66□□□□□ -1.34
VRK3-204ENST00000593912 FBLN2P98095 1184 aa6.66□□□□□ -1.34
VRK3-204ENST00000593912 PEG3Q9GZU2 1588 aa6.65□□□□□ -1.34
VRK3-204ENST00000593912 CLASP1Q7Z460 1538 aa6.63□□□□□ -1.35
VRK3-204ENST00000593912 IFT140Q96RY7 1462 aa6.62□□□□□ -1.35
VRK3-204ENST00000593912 DISP3Q9P2K9 1392 aa6.62□□□□□ -1.35
VRK3-204ENST00000593912 SYNJ2O15056 1496 aa6.6□□□□□ -1.35
VRK3-204ENST00000593912 AQRO60306 1485 aaKnown RBP eCLIP6.6□□□□□ -1.353e-7■■■■■ 63.7
VRK3-204ENST00000593912 GAPVD1Q14C86 1478 aa6.6□□□□□ -1.35
VRK3-204ENST00000593912 ADGRL1O94910 1474 aa6.59□□□□□ -1.36
VRK3-204ENST00000593912 KDM6BO15054 1643 aa6.58□□□□□ -1.36
VRK3-204ENST00000593912 MROH2BQ7Z745 1585 aa6.57□□□□□ -1.36
VRK3-204ENST00000593912 SENP3Q9H4L4 574 aaPredicted RBP6.56□□□□□ -1.36
VRK3-204ENST00000593912 CFTRP13569 1480 aa6.54□□□□□ -1.36
VRK3-204ENST00000593912 SYNJ1O43426 1573 aa6.54□□□□□ -1.36
VRK3-204ENST00000593912 TSPOAP1O95153 1857 aa6.52□□□□□ -1.37
VRK3-204ENST00000593912 TARBP1Q13395 1621 aaKnown RBP6.52□□□□□ -1.37
VRK3-204ENST00000593912 SPATA31D1Q6ZQQ2 1576 aa6.52□□□□□ -1.37
VRK3-204ENST00000593912 TOPBP1Q92547 1522 aa6.51□□□□□ -1.37
VRK3-204ENST00000593912 SNAPC4Q5SXM2 1469 aa6.51□□□□□ -1.37
VRK3-204ENST00000593912 FAM69CQ0P6D2 419 aa6.5□□□□□ -1.37
VRK3-204ENST00000593912 PRDM2Q13029 1718 aa6.48□□□□□ -1.37
VRK3-204ENST00000593912 WIZO95785 1651 aa6.48□□□□□ -1.37
VRK3-204ENST00000593912 CHMP7Q8WUX9 453 aaPredicted RBP6.47□□□□□ -1.37
VRK3-204ENST00000593912 DIP2BQ9P265 1576 aa6.47□□□□□ -1.37
VRK3-204ENST00000593912 ABCC10Q5T3U5 1492 aa6.47□□□□□ -1.37
VRK3-204ENST00000593912 TDRD9Q8NDG6 1382 aaKnown RBP6.44□□□□□ -1.38
VRK3-204ENST00000593912 RAD54L2Q9Y4B4 1467 aa6.43□□□□□ -1.38
VRK3-204ENST00000593912 DNMBPQ6XZF7 1577 aa6.43□□□□□ -1.38
VRK3-204ENST00000593912 POLA1P09884 1462 aaPredicted RBP6.41□□□□□ -1.38
VRK3-204ENST00000593912 CEP170Q5SW79 1584 aa6.41□□□□□ -1.38
VRK3-204ENST00000593912 MAGI1Q96QZ7 1491 aaPredicted RBP6.41□□□□□ -1.38
VRK3-204ENST00000593912 CERKQ8TCT0 537 aa6.38□□□□□ -1.39
VRK3-204ENST00000593912 MAPKBP1O60336 1514 aa6.38□□□□□ -1.39
VRK3-204ENST00000593912 PPRC1Q5VV67 1664 aaKnown RBP6.38□□□□□ -1.39
VRK3-204ENST00000593912 ABCC8Q09428 1581 aa6.37□□□□□ -1.39
VRK3-204ENST00000593912 COL17A1Q9UMD9 1497 aaPredicted RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms