RNA–Protein interactions for RNA: ENST00000588781.1

SPIDR-228, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 5

Gene SPIDR, Length 164 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-228ENST00000588781 NISCHQ9Y2I1 1504 aa15.03■□□□□ -0
SPIDR-228ENST00000588781 ABCC9O60706 1549 aa13.08□□□□□ -0.31
SPIDR-228ENST00000588781 CCDC180Q9P1Z9 1646 aa12.98□□□□□ -0.33
SPIDR-228ENST00000588781 DNAJC5BQ9UF47 199 aa12.74□□□□□ -0.37
SPIDR-228ENST00000588781 ZCCHC6Q5VYS8 1495 aaKnown RBP12.72□□□□□ -0.37
SPIDR-228ENST00000588781 DCAF1Q9Y4B6 1507 aa12.5□□□□□ -0.41
SPIDR-228ENST00000588781 SHROOM4Q9ULL8 1493 aa12.47□□□□□ -0.41
SPIDR-228ENST00000588781 RB1CC1Q8TDY2 1594 aa12.29□□□□□ -0.44
SPIDR-228ENST00000588781 DCAF8L2P0C7V8 631 aa12.27□□□□□ -0.45
SPIDR-228ENST00000588781 SUPT5HO00267 1087 aaKnown RBP12.25□□□□□ -0.45
SPIDR-228ENST00000588781 MYO15BQ96JP2 1530 aa12.22□□□□□ -0.45
SPIDR-228ENST00000588781 NACADO15069 1562 aa12.1□□□□□ -0.47
SPIDR-228ENST00000588781 PABPN1Q86U42 306 aaKnown RBP eCLIP12.08□□□□□ -0.48
SPIDR-228ENST00000588781 UNC13AQ9UPW8 1703 aa12.06□□□□□ -0.48
SPIDR-228ENST00000588781 DNAJC5Q9H3Z4 198 aa12.05□□□□□ -0.48
SPIDR-228ENST00000588781 BICRAQ9NZM4 1560 aa11.98□□□□□ -0.49
SPIDR-228ENST00000588781 CHIC1Q5VXU3 224 aa11.95□□□□□ -0.5
SPIDR-228ENST00000588781 SCRIBQ14160 1630 aa11.91□□□□□ -0.5
SPIDR-228ENST00000588781 CECR2Q9BXF3 1484 aa11.85□□□□□ -0.51
SPIDR-228ENST00000588781 CC2D2AQ9P2K1 1620 aa11.83□□□□□ -0.52
SPIDR-228ENST00000588781 RSF1Q96T23 1441 aaPredicted RBP11.79□□□□□ -0.52
SPIDR-228ENST00000588781 EIF4G1Q04637 1599 aaKnown RBP11.69□□□□□ -0.54
SPIDR-228ENST00000588781 BAZ1AQ9NRL2 1556 aaPredicted RBP11.62□□□□□ -0.55
SPIDR-228ENST00000588781 MROH2BQ7Z745 1585 aa11.58□□□□□ -0.56
SPIDR-228ENST00000588781 TRIM41Q8WV44 630 aa11.56□□□□□ -0.56
SPIDR-228ENST00000588781 CUX2O14529 1486 aa11.51□□□□□ -0.57
SPIDR-228ENST00000588781 WIZO95785 1651 aa11.5□□□□□ -0.57
SPIDR-228ENST00000588781 TOP2AP11388 1531 aaKnown RBP11.48□□□□□ -0.57
SPIDR-228ENST00000588781 SMARCA4P51532 1647 aa11.47□□□□□ -0.57
SPIDR-228ENST00000588781 HRCP23327 699 aa11.47□□□□□ -0.57
SPIDR-228ENST00000588781 LOC105371045A0A1W2PR82 267 aa11.44□□□□□ -0.58
SPIDR-228ENST00000588781 PCGF6Q9BYE7 350 aa11.41□□□□□ -0.58
SPIDR-228ENST00000588781 TRIM26Q12899 539 aaPredicted RBP11.4□□□□□ -0.58
SPIDR-228ENST00000588781 SMARCA2P51531 1590 aa11.33□□□□□ -0.6
SPIDR-228ENST00000588781 PEG3Q9GZU2 1588 aa11.33□□□□□ -0.6
SPIDR-228ENST00000588781 CCDC88BA6NC98 1476 aa11.32□□□□□ -0.6
SPIDR-228ENST00000588781 EEA1Q15075 1411 aa11.31□□□□□ -0.6
SPIDR-228ENST00000588781 ERCC6Q03468 1493 aa11.31□□□□□ -0.6
SPIDR-228ENST00000588781 ZEB1P37275 1124 aaPredicted RBP11.29□□□□□ -0.6
SPIDR-228ENST00000588781 FAM9AQ8IZU1 332 aaPredicted RBP11.27□□□□□ -0.61
SPIDR-228ENST00000588781 NCAPD3P42695 1498 aa11.18□□□□□ -0.62
SPIDR-228ENST00000588781 BAZ1BQ9UIG0 1483 aaKnown RBP11.18□□□□□ -0.62
SPIDR-228ENST00000588781 ATAD2BQ9ULI0 1458 aa11.18□□□□□ -0.62
SPIDR-228ENST00000588781 ABCC8Q09428 1581 aa11.16□□□□□ -0.62
SPIDR-228ENST00000588781 WRNQ14191 1432 aaPredicted RBP eCLIP11.14□□□□□ -0.63
SPIDR-228ENST00000588781 THOC2Q8NI27 1593 aaKnown RBP11.14□□□□□ -0.63
SPIDR-228ENST00000588781 TNIKQ9UKE5 1360 aa11.14□□□□□ -0.63
SPIDR-228ENST00000588781 NESP48681 1621 aa11.12□□□□□ -0.63
SPIDR-228ENST00000588781 CSRNP3Q8WYN3 585 aa11.11□□□□□ -0.63
SPIDR-228ENST00000588781 GOLGA3Q08378 1498 aa11.1□□□□□ -0.63
SPIDR-228ENST00000588781 HMGXB3Q12766 1538 aa11.08□□□□□ -0.64
SPIDR-228ENST00000588781 CEP164Q9UPV0 1460 aa11.06□□□□□ -0.64
SPIDR-228ENST00000588781 CEP162Q5TB80 1403 aa11.06□□□□□ -0.64
SPIDR-228ENST00000588781 SOGA1O94964 1423 aa11.05□□□□□ -0.64
SPIDR-228ENST00000588781 KIF21BO75037 1637 aa11.05□□□□□ -0.64
SPIDR-228ENST00000588781 EHMT2Q96KQ7 1210 aa11.04□□□□□ -0.64
SPIDR-228ENST00000588781 UBTFP17480 764 aaKnown RBP11.01□□□□□ -0.65
SPIDR-228ENST00000588781 SYNJ1O43426 1573 aa11□□□□□ -0.65
SPIDR-228ENST00000588781 LAMC3Q9Y6N6 1575 aa11□□□□□ -0.65
SPIDR-228ENST00000588781 TOP2BQ02880 1626 aa10.99□□□□□ -0.65
SPIDR-228ENST00000588781 KIF21AQ7Z4S6 1674 aa10.99□□□□□ -0.65
SPIDR-228ENST00000588781 PPARGC1BQ86YN6 1023 aaKnown RBP10.98□□□□□ -0.65
SPIDR-228ENST00000588781 BIVM-ERCC5R4GMW8 1640 aa10.97□□□□□ -0.65
SPIDR-228ENST00000588781 RUSC2Q8N2Y8 1516 aa10.94□□□□□ -0.66
SPIDR-228ENST00000588781 PDS5BQ9NTI5 1447 aa10.92□□□□□ -0.66
SPIDR-228ENST00000588781 ERICH3Q5RHP9 1530 aa10.91□□□□□ -0.66
SPIDR-228ENST00000588781 CLIP1P30622 1438 aa10.91□□□□□ -0.66
SPIDR-228ENST00000588781 CFTRP13569 1480 aa10.89□□□□□ -0.67
SPIDR-228ENST00000588781 APLP2Q06481 763 aa10.89□□□□□ -0.67
SPIDR-228ENST00000588781 PRDM2Q13029 1718 aa10.89□□□□□ -0.67
SPIDR-228ENST00000588781 VPS8Q8N3P4 1428 aa10.88□□□□□ -0.67
SPIDR-228ENST00000588781 CCER1Q8TC90 406 aaPredicted RBP10.88□□□□□ -0.67
SPIDR-228ENST00000588781 OSCARQ8IYS5 282 aa10.87□□□□□ -0.67
SPIDR-228ENST00000588781 WDR62O43379 1518 aa10.87□□□□□ -0.67
SPIDR-228ENST00000588781 KIF27Q86VH2 1401 aa10.86□□□□□ -0.67
SPIDR-228ENST00000588781 MRC2Q9UBG0 1479 aa10.86□□□□□ -0.67
SPIDR-228ENST00000588781 PRXQ9BXM0 1461 aa10.83□□□□□ -0.68
SPIDR-228ENST00000588781 RAPGEF2Q9Y4G8 1499 aa10.82□□□□□ -0.68
SPIDR-228ENST00000588781 RIMBP3CA6NJZ7 1639 aa10.82□□□□□ -0.68
SPIDR-228ENST00000588781 RIMBP3BA6NNM3 1639 aa10.82□□□□□ -0.68
SPIDR-228ENST00000588781 RIMBP3Q9UFD9 1639 aa10.82□□□□□ -0.68
SPIDR-228ENST00000588781 CUX1P39880 1505 aa10.82□□□□□ -0.68
SPIDR-228ENST00000588781 CADPSQ9ULU8 1353 aa10.79□□□□□ -0.68
SPIDR-228ENST00000588781 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.77□□□□□ -0.69
SPIDR-228ENST00000588781 ARHGEF11O15085 1522 aa10.72□□□□□ -0.69
SPIDR-228ENST00000588781 TTBK1Q5TCY1 1321 aaPredicted RBP10.7□□□□□ -0.7
SPIDR-228ENST00000588781 ARAP1Q96P48 1450 aa10.69□□□□□ -0.7
SPIDR-228ENST00000588781 CLSPNQ9HAW4 1339 aa10.69□□□□□ -0.7
SPIDR-228ENST00000588781 AEBP2Q6ZN18 517 aaPredicted RBP10.68□□□□□ -0.7
SPIDR-228ENST00000588781 MAP3K1Q13233 1512 aa10.67□□□□□ -0.7
SPIDR-228ENST00000588781 FGD5Q6ZNL6 1462 aa10.67□□□□□ -0.7
SPIDR-228ENST00000588781 DNMBPQ6XZF7 1577 aa10.66□□□□□ -0.7
SPIDR-228ENST00000588781 FANCD2Q9BXW9 1451 aa10.66□□□□□ -0.7
SPIDR-228ENST00000588781 IGF1RP08069 1367 aa10.65□□□□□ -0.71
SPIDR-228ENST00000588781 CARMIL1Q5VZK9 1371 aa10.65□□□□□ -0.71
SPIDR-228ENST00000588781 TRHP20396 242 aaPredicted RBP10.64□□□□□ -0.71
SPIDR-228ENST00000588781 CYB5RLQ6IPT4 315 aa10.63□□□□□ -0.71
SPIDR-228ENST00000588781 FHAD1B1AJZ9 1412 aa10.63□□□□□ -0.71
SPIDR-228ENST00000588781 ARHGAP35Q9NRY4 1499 aa10.62□□□□□ -0.71
SPIDR-228ENST00000588781 HNRNPUL2Q1KMD3 747 aaKnown RBP10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms