RNA–Protein interactions for RNA: ENST00000588004.1

LAMA3-208, Transcript of laminin subunit alpha 3, humanhuman

TSL 3

Gene LAMA3, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAMA3-208ENST00000588004 AEBP2Q6ZN18 517 aaPredicted RBP19.71■□□□□ 0.75
LAMA3-208ENST00000588004 CHIC1Q5VXU3 224 aa18.54■□□□□ 0.56
LAMA3-208ENST00000588004 SENP3Q9H4L4 574 aaPredicted RBP17■□□□□ 0.31
LAMA3-208ENST00000588004 PHF23Q9BUL5 403 aaPredicted RBP16.69■□□□□ 0.26
LAMA3-208ENST00000588004 FOXD1Q16676 465 aa15.84■□□□□ 0.13
LAMA3-208ENST00000588004 NISCHQ9Y2I1 1504 aa15.53■□□□□ 0.08
LAMA3-208ENST00000588004 POTEDQ86YR6 584 aa15.46■□□□□ 0.07
LAMA3-208ENST00000588004 MSH5O43196 834 aa15.09■□□□□ 0.01
LAMA3-208ENST00000588004 PIAS4Q8N2W9 510 aaPredicted RBP14.72□□□□□ -0.05
LAMA3-208ENST00000588004 PLPPR3Q6T4P5 718 aa14.47□□□□□ -0.09
LAMA3-208ENST00000588004 PPP6R1Q9UPN7 881 aa14.42□□□□□ -0.1
LAMA3-208ENST00000588004 ADRA2BP18089 450 aa14.37□□□□□ -0.11
LAMA3-208ENST00000588004 ABCC9O60706 1549 aa14.12□□□□□ -0.15
LAMA3-208ENST00000588004 CCDC180Q9P1Z9 1646 aa14□□□□□ -0.17
LAMA3-208ENST00000588004 DNAJC5BQ9UF47 199 aa13.38□□□□□ -0.27
LAMA3-208ENST00000588004 DMRT2Q9Y5R5 561 aa13.37□□□□□ -0.27
LAMA3-208ENST00000588004 RB1CC1Q8TDY2 1594 aa13.34□□□□□ -0.27
LAMA3-208ENST00000588004 MAPK8IP2Q13387 824 aaPredicted RBP13.34□□□□□ -0.27
LAMA3-208ENST00000588004 SCAF1Q9H7N4 1312 aaKnown RBP13.29□□□□□ -0.28
LAMA3-208ENST00000588004 CACNB1Q02641 598 aaPredicted RBP13.25□□□□□ -0.29
LAMA3-208ENST00000588004 NACADO15069 1562 aa13.21□□□□□ -0.29
LAMA3-208ENST00000588004 UNC13AQ9UPW8 1703 aa13.17□□□□□ -0.3
LAMA3-208ENST00000588004 PABPN1Q86U42 306 aaKnown RBP eCLIP13.1□□□□□ -0.31
LAMA3-208ENST00000588004 BICRAQ9NZM4 1560 aa13.07□□□□□ -0.32
LAMA3-208ENST00000588004 DCAF8L2P0C7V8 631 aa13.05□□□□□ -0.32
LAMA3-208ENST00000588004 MYO15BQ96JP2 1530 aa12.98□□□□□ -0.33
LAMA3-208ENST00000588004 DCAF8L1A6NGE4 600 aa12.91□□□□□ -0.34
LAMA3-208ENST00000588004 ZCCHC6Q5VYS8 1495 aaKnown RBP12.86□□□□□ -0.35
LAMA3-208ENST00000588004 DCAF1Q9Y4B6 1507 aa12.79□□□□□ -0.36
LAMA3-208ENST00000588004 SCRIBQ14160 1630 aa12.78□□□□□ -0.36
LAMA3-208ENST00000588004 RNF39Q9H2S5 420 aa12.77□□□□□ -0.37
LAMA3-208ENST00000588004 CC2D2AQ9P2K1 1620 aa12.77□□□□□ -0.37
LAMA3-208ENST00000588004 SHROOM4Q9ULL8 1493 aa12.75□□□□□ -0.37
LAMA3-208ENST00000588004 CECR2Q9BXF3 1484 aa12.71□□□□□ -0.38
LAMA3-208ENST00000588004 EIF4G1Q04637 1599 aaKnown RBP12.7□□□□□ -0.38
LAMA3-208ENST00000588004 HOXD11P31277 338 aaPredicted RBP12.69□□□□□ -0.38
LAMA3-208ENST00000588004 C1QBPQ07021 282 aaKnown RBP12.62□□□□□ -0.39
LAMA3-208ENST00000588004 PPP4R3CPQ6ZMV5 832 aa12.6□□□□□ -0.39
LAMA3-208ENST00000588004 CNKSR2Q8WXI2 1034 aa12.5□□□□□ -0.41
LAMA3-208ENST00000588004 RNF216Q9NWF9 866 aaPredicted RBP12.49□□□□□ -0.41
LAMA3-208ENST00000588004 DNAJC5Q9H3Z4 198 aa12.28□□□□□ -0.44
LAMA3-208ENST00000588004 NCAPD3P42695 1498 aa12.21□□□□□ -0.46
LAMA3-208ENST00000588004 ATAD2BQ9ULI0 1458 aa12.17□□□□□ -0.46
LAMA3-208ENST00000588004 SMARCA4P51532 1647 aa12.17□□□□□ -0.46
LAMA3-208ENST00000588004 CUX2O14529 1486 aa12.16□□□□□ -0.46
LAMA3-208ENST00000588004 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.16□□□□□ -0.46
LAMA3-208ENST00000588004 NESP48681 1621 aa12.14□□□□□ -0.47
LAMA3-208ENST00000588004 ERCC6Q03468 1493 aa12.14□□□□□ -0.47
LAMA3-208ENST00000588004 HMGXB3Q12766 1538 aa12.13□□□□□ -0.47
LAMA3-208ENST00000588004 SMARCA2P51531 1590 aa12.1□□□□□ -0.47
LAMA3-208ENST00000588004 POTEHQ6S545 545 aa12.06□□□□□ -0.48
LAMA3-208ENST00000588004 THOC2Q8NI27 1593 aaKnown RBP12.05□□□□□ -0.48
LAMA3-208ENST00000588004 NCBP3Q53F19 620 aaKnown RBP12.05□□□□□ -0.48
LAMA3-208ENST00000588004 PEG3Q9GZU2 1588 aa12.04□□□□□ -0.48
LAMA3-208ENST00000588004 BAZ1AQ9NRL2 1556 aaPredicted RBP12.04□□□□□ -0.48
LAMA3-208ENST00000588004 BAZ1BQ9UIG0 1483 aaKnown RBP12.03□□□□□ -0.48
LAMA3-208ENST00000588004 MROH2BQ7Z745 1585 aa12.01□□□□□ -0.49
LAMA3-208ENST00000588004 KIF21AQ7Z4S6 1674 aa12□□□□□ -0.49
LAMA3-208ENST00000588004 LAMC3Q9Y6N6 1575 aa11.96□□□□□ -0.5
LAMA3-208ENST00000588004 WIZO95785 1651 aa11.87□□□□□ -0.51
LAMA3-208ENST00000588004 PDS5BQ9NTI5 1447 aa11.83□□□□□ -0.52
LAMA3-208ENST00000588004 WDR62O43379 1518 aa11.81□□□□□ -0.52
LAMA3-208ENST00000588004 CAPN15O75808 1086 aa11.81□□□□□ -0.52
LAMA3-208ENST00000588004 DSG3P32926 999 aa11.81□□□□□ -0.52
LAMA3-208ENST00000588004 MRC2Q9UBG0 1479 aa11.81□□□□□ -0.52
LAMA3-208ENST00000588004 CADPSQ9ULU8 1353 aa11.8□□□□□ -0.52
LAMA3-208ENST00000588004 NPM3O75607 178 aaKnown RBP11.76□□□□□ -0.53
LAMA3-208ENST00000588004 U3KPZ7 1027 aaPredicted RBP11.75□□□□□ -0.53
LAMA3-208ENST00000588004 SPINK5Q9NQ38 1064 aaPredicted RBP11.73□□□□□ -0.53
LAMA3-208ENST00000588004 CEP164Q9UPV0 1460 aa11.72□□□□□ -0.53
LAMA3-208ENST00000588004 FANCD2Q9BXW9 1451 aa11.71□□□□□ -0.53
LAMA3-208ENST00000588004 TRIM41Q8WV44 630 aa11.7□□□□□ -0.54
LAMA3-208ENST00000588004 CFTRP13569 1480 aa11.69□□□□□ -0.54
LAMA3-208ENST00000588004 RSF1Q96T23 1441 aaPredicted RBP11.68□□□□□ -0.54
LAMA3-208ENST00000588004 URB2Q14146 1524 aaKnown RBP11.67□□□□□ -0.54
LAMA3-208ENST00000588004 TOP2AP11388 1531 aaKnown RBP11.66□□□□□ -0.54
LAMA3-208ENST00000588004 PRDM2Q13029 1718 aa11.61□□□□□ -0.55
LAMA3-208ENST00000588004 ZNF608Q9ULD9 1512 aaPredicted RBP11.55□□□□□ -0.56
LAMA3-208ENST00000588004 SUPT5HO00267 1087 aaKnown RBP11.54□□□□□ -0.56
LAMA3-208ENST00000588004 APLP2Q06481 763 aa11.53□□□□□ -0.56
LAMA3-208ENST00000588004 RIMBP3CA6NJZ7 1639 aa11.53□□□□□ -0.56
LAMA3-208ENST00000588004 RIMBP3BA6NNM3 1639 aa11.53□□□□□ -0.56
LAMA3-208ENST00000588004 RIMBP3Q9UFD9 1639 aa11.53□□□□□ -0.56
LAMA3-208ENST00000588004 CCDC88BA6NC98 1476 aa11.52□□□□□ -0.56
LAMA3-208ENST00000588004 OSCARQ8IYS5 282 aa11.52□□□□□ -0.57
LAMA3-208ENST00000588004 TRHP20396 242 aaPredicted RBP11.5□□□□□ -0.57
LAMA3-208ENST00000588004 TOPBP1Q92547 1522 aa11.5□□□□□ -0.57
LAMA3-208ENST00000588004 EIF4G3O43432 1585 aaKnown RBP11.5□□□□□ -0.57
LAMA3-208ENST00000588004 IFT140Q96RY7 1462 aa11.48□□□□□ -0.57
LAMA3-208ENST00000588004 ZNF219Q9P2Y4 722 aaPredicted RBP11.47□□□□□ -0.57
LAMA3-208ENST00000588004 ARHGEF11O15085 1522 aa11.46□□□□□ -0.57
LAMA3-208ENST00000588004 TARBP1Q13395 1621 aaKnown RBP11.45□□□□□ -0.58
LAMA3-208ENST00000588004 CHD1O14646 1710 aa11.44□□□□□ -0.58
LAMA3-208ENST00000588004 ABCB7O75027 752 aa11.44□□□□□ -0.58
LAMA3-208ENST00000588004 DNMBPQ6XZF7 1577 aa11.44□□□□□ -0.58
LAMA3-208ENST00000588004 AQRO60306 1485 aaKnown RBP eCLIP11.39□□□□□ -0.59
LAMA3-208ENST00000588004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.38□□□□□ -0.59
LAMA3-208ENST00000588004 HNRNPUL2Q1KMD3 747 aaKnown RBP11.38□□□□□ -0.59
LAMA3-208ENST00000588004 POLA1P09884 1462 aaPredicted RBP11.38□□□□□ -0.59
LAMA3-208ENST00000588004 ARAP1Q96P48 1450 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms