RNA–Protein interactions for RNA: ENST00000582288.1

TVP23B-210, Transcript of trans-golgi network vesicle protein 23 homolog B, humanhuman

TSL 3

Gene TVP23B, Length 336 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23B-210ENST00000582288 AEBP2Q6ZN18 517 aaPredicted RBP19.48■□□□□ 0.71
TVP23B-210ENST00000582288 CHIC1Q5VXU3 224 aa18.37■□□□□ 0.53
TVP23B-210ENST00000582288 SENP3Q9H4L4 574 aaPredicted RBP16.89■□□□□ 0.29
TVP23B-210ENST00000582288 PHF23Q9BUL5 403 aaPredicted RBP16.5■□□□□ 0.23
TVP23B-210ENST00000582288 NISCHQ9Y2I1 1504 aa16.12■□□□□ 0.17
TVP23B-210ENST00000582288 POTEDQ86YR6 584 aa15.93■□□□□ 0.14
TVP23B-210ENST00000582288 FOXD1Q16676 465 aa15.74■□□□□ 0.11
TVP23B-210ENST00000582288 MSH5O43196 834 aa15.13■□□□□ 0.01
TVP23B-210ENST00000582288 ABCC9O60706 1549 aa14.85□□□□□ -0.03
TVP23B-210ENST00000582288 CCDC180Q9P1Z9 1646 aa14.65□□□□□ -0.06
TVP23B-210ENST00000582288 PIAS4Q8N2W9 510 aaPredicted RBP14.58□□□□□ -0.08
TVP23B-210ENST00000582288 DNAJC5BQ9UF47 199 aa14.23□□□□□ -0.13
TVP23B-210ENST00000582288 PPP6R1Q9UPN7 881 aa14.08□□□□□ -0.16
TVP23B-210ENST00000582288 RB1CC1Q8TDY2 1594 aa14.08□□□□□ -0.16
TVP23B-210ENST00000582288 ADRA2BP18089 450 aa14.03□□□□□ -0.16
TVP23B-210ENST00000582288 PLPPR3Q6T4P5 718 aa14□□□□□ -0.17
TVP23B-210ENST00000582288 NACADO15069 1562 aa13.93□□□□□ -0.18
TVP23B-210ENST00000582288 PABPN1Q86U42 306 aaKnown RBP eCLIP13.74□□□□□ -0.21
TVP23B-210ENST00000582288 MYO15BQ96JP2 1530 aa13.7□□□□□ -0.22
TVP23B-210ENST00000582288 UNC13AQ9UPW8 1703 aa13.69□□□□□ -0.22
TVP23B-210ENST00000582288 BICRAQ9NZM4 1560 aa13.65□□□□□ -0.22
TVP23B-210ENST00000582288 DCAF8L2P0C7V8 631 aa13.62□□□□□ -0.23
TVP23B-210ENST00000582288 SHROOM4Q9ULL8 1493 aa13.56□□□□□ -0.24
TVP23B-210ENST00000582288 CECR2Q9BXF3 1484 aa13.46□□□□□ -0.25
TVP23B-210ENST00000582288 CC2D2AQ9P2K1 1620 aa13.44□□□□□ -0.26
TVP23B-210ENST00000582288 CACNB1Q02641 598 aaPredicted RBP13.42□□□□□ -0.26
TVP23B-210ENST00000582288 DNAJC5Q9H3Z4 198 aa13.39□□□□□ -0.27
TVP23B-210ENST00000582288 DCAF1Q9Y4B6 1507 aa13.37□□□□□ -0.27
TVP23B-210ENST00000582288 EIF4G1Q04637 1599 aaKnown RBP13.35□□□□□ -0.27
TVP23B-210ENST00000582288 ZCCHC6Q5VYS8 1495 aaKnown RBP13.29□□□□□ -0.28
TVP23B-210ENST00000582288 DMRT2Q9Y5R5 561 aa13.23□□□□□ -0.29
TVP23B-210ENST00000582288 SCRIBQ14160 1630 aa13.21□□□□□ -0.3
TVP23B-210ENST00000582288 MAPK8IP2Q13387 824 aaPredicted RBP13.08□□□□□ -0.32
TVP23B-210ENST00000582288 CUX2O14529 1486 aa13.04□□□□□ -0.32
TVP23B-210ENST00000582288 SCAF1Q9H7N4 1312 aaKnown RBP13.02□□□□□ -0.33
TVP23B-210ENST00000582288 NCAPD3P42695 1498 aa12.87□□□□□ -0.35
TVP23B-210ENST00000582288 ERCC6Q03468 1493 aa12.87□□□□□ -0.35
TVP23B-210ENST00000582288 DCAF8L1A6NGE4 600 aa12.77□□□□□ -0.37
TVP23B-210ENST00000582288 RNF39Q9H2S5 420 aa12.76□□□□□ -0.37
TVP23B-210ENST00000582288 ATAD2BQ9ULI0 1458 aa12.73□□□□□ -0.37
TVP23B-210ENST00000582288 HMGXB3Q12766 1538 aa12.72□□□□□ -0.37
TVP23B-210ENST00000582288 SMARCA2P51531 1590 aa12.71□□□□□ -0.37
TVP23B-210ENST00000582288 NESP48681 1621 aa12.65□□□□□ -0.38
TVP23B-210ENST00000582288 THOC2Q8NI27 1593 aaKnown RBP12.64□□□□□ -0.39
TVP23B-210ENST00000582288 SMARCA4P51532 1647 aa12.62□□□□□ -0.39
TVP23B-210ENST00000582288 LAMC3Q9Y6N6 1575 aa12.62□□□□□ -0.39
TVP23B-210ENST00000582288 C1QBPQ07021 282 aaKnown RBP12.61□□□□□ -0.39
TVP23B-210ENST00000582288 PEG3Q9GZU2 1588 aa12.58□□□□□ -0.4
TVP23B-210ENST00000582288 BAZ1BQ9UIG0 1483 aaKnown RBP12.58□□□□□ -0.4
TVP23B-210ENST00000582288 PDS5BQ9NTI5 1447 aa12.55□□□□□ -0.4
TVP23B-210ENST00000582288 BAZ1AQ9NRL2 1556 aaPredicted RBP12.55□□□□□ -0.4
TVP23B-210ENST00000582288 TRIM41Q8WV44 630 aa12.54□□□□□ -0.4
TVP23B-210ENST00000582288 KIF21AQ7Z4S6 1674 aa12.49□□□□□ -0.41
TVP23B-210ENST00000582288 HOXD11P31277 338 aaPredicted RBP12.45□□□□□ -0.42
TVP23B-210ENST00000582288 WDR62O43379 1518 aa12.43□□□□□ -0.42
TVP23B-210ENST00000582288 MRC2Q9UBG0 1479 aa12.43□□□□□ -0.42
TVP23B-210ENST00000582288 CADPSQ9ULU8 1353 aa12.43□□□□□ -0.42
TVP23B-210ENST00000582288 POTEHQ6S545 545 aa12.37□□□□□ -0.43
TVP23B-210ENST00000582288 MROH2BQ7Z745 1585 aa12.37□□□□□ -0.43
TVP23B-210ENST00000582288 OSCARQ8IYS5 282 aa12.36□□□□□ -0.43
TVP23B-210ENST00000582288 CEP164Q9UPV0 1460 aa12.31□□□□□ -0.44
TVP23B-210ENST00000582288 FANCD2Q9BXW9 1451 aa12.26□□□□□ -0.45
TVP23B-210ENST00000582288 CFTRP13569 1480 aa12.23□□□□□ -0.45
TVP23B-210ENST00000582288 RIMBP3CA6NJZ7 1639 aa12.19□□□□□ -0.46
TVP23B-210ENST00000582288 RIMBP3BA6NNM3 1639 aa12.19□□□□□ -0.46
TVP23B-210ENST00000582288 RIMBP3Q9UFD9 1639 aa12.19□□□□□ -0.46
TVP23B-210ENST00000582288 RNF216Q9NWF9 866 aaPredicted RBP12.19□□□□□ -0.46
TVP23B-210ENST00000582288 WIZO95785 1651 aa12.18□□□□□ -0.46
TVP23B-210ENST00000582288 URB2Q14146 1524 aaKnown RBP12.16□□□□□ -0.46
TVP23B-210ENST00000582288 ARHGEF11O15085 1522 aa12.13□□□□□ -0.47
TVP23B-210ENST00000582288 PPP4R3CPQ6ZMV5 832 aa12.13□□□□□ -0.47
TVP23B-210ENST00000582288 CNKSR2Q8WXI2 1034 aa12.11□□□□□ -0.47
TVP23B-210ENST00000582288 IFT140Q96RY7 1462 aa12.1□□□□□ -0.47
TVP23B-210ENST00000582288 TOP2AP11388 1531 aaKnown RBP12.06□□□□□ -0.48
TVP23B-210ENST00000582288 PRDM2Q13029 1718 aa12.05□□□□□ -0.48
TVP23B-210ENST00000582288 ZNF608Q9ULD9 1512 aaPredicted RBP12.05□□□□□ -0.48
TVP23B-210ENST00000582288 CYB5RLQ6IPT4 315 aa12.03□□□□□ -0.48
TVP23B-210ENST00000582288 ABCC8Q09428 1581 aa12.03□□□□□ -0.48
TVP23B-210ENST00000582288 RSF1Q96T23 1441 aaPredicted RBP12.02□□□□□ -0.49
TVP23B-210ENST00000582288 TRHP20396 242 aaPredicted RBP11.99□□□□□ -0.49
TVP23B-210ENST00000582288 TOPBP1Q92547 1522 aa11.99□□□□□ -0.49
TVP23B-210ENST00000582288 EIF4G3O43432 1585 aaKnown RBP11.99□□□□□ -0.49
TVP23B-210ENST00000582288 ARAP1Q96P48 1450 aa11.98□□□□□ -0.49
TVP23B-210ENST00000582288 DNMBPQ6XZF7 1577 aa11.93□□□□□ -0.5
TVP23B-210ENST00000582288 CHD1O14646 1710 aa11.93□□□□□ -0.5
TVP23B-210ENST00000582288 TARBP1Q13395 1621 aaKnown RBP11.92□□□□□ -0.5
TVP23B-210ENST00000582288 CCDC88BA6NC98 1476 aa11.91□□□□□ -0.5
TVP23B-210ENST00000582288 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.91□□□□□ -0.5
TVP23B-210ENST00000582288 AQRO60306 1485 aaKnown RBP eCLIP11.9□□□□□ -0.5
TVP23B-210ENST00000582288 WDR97A6NE52 1622 aa11.86□□□□□ -0.51
TVP23B-210ENST00000582288 FBLN2P98095 1184 aa11.85□□□□□ -0.51
TVP23B-210ENST00000582288 CLASP1Q7Z460 1538 aa11.85□□□□□ -0.51
TVP23B-210ENST00000582288 POLA1P09884 1462 aaPredicted RBP11.84□□□□□ -0.51
TVP23B-210ENST00000582288 SYNJ1O43426 1573 aa11.81□□□□□ -0.52
TVP23B-210ENST00000582288 MAGI1Q96QZ7 1491 aaPredicted RBP11.8□□□□□ -0.52
TVP23B-210ENST00000582288 SOGA1O94964 1423 aa11.79□□□□□ -0.52
TVP23B-210ENST00000582288 SNAPC4Q5SXM2 1469 aa11.78□□□□□ -0.52
TVP23B-210ENST00000582288 CHMP7Q8WUX9 453 aaPredicted RBP11.77□□□□□ -0.53
TVP23B-210ENST00000582288 TDRD9Q8NDG6 1382 aaKnown RBP11.77□□□□□ -0.53
TVP23B-210ENST00000582288 RAD54L2Q9Y4B4 1467 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 136.9 ms