RNA–Protein interactions for RNA: ENST00000581273.5

TVP23C-208, Transcript of trans-golgi network vesicle protein 23 homolog C, humanhuman

TSL 3

Gene TVP23C, Length 488 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23C-208ENST00000581273 AEBP2Q6ZN18 517 aaPredicted RBP18.09■□□□□ 0.49
TVP23C-208ENST00000581273 CHIC1Q5VXU3 224 aa17.92■□□□□ 0.46
TVP23C-208ENST00000581273 NISCHQ9Y2I1 1504 aa16.38■□□□□ 0.21
TVP23C-208ENST00000581273 DNAJC5BQ9UF47 199 aa15.87■□□□□ 0.13
TVP23C-208ENST00000581273 ABCC9O60706 1549 aa15.87■□□□□ 0.13
TVP23C-208ENST00000581273 PHF23Q9BUL5 403 aaPredicted RBP15.79■□□□□ 0.12
TVP23C-208ENST00000581273 SENP3Q9H4L4 574 aaPredicted RBP15.3■□□□□ 0.04
TVP23C-208ENST00000581273 DNAJC5Q9H3Z4 198 aa15.25■□□□□ 0.03
TVP23C-208ENST00000581273 CCDC180Q9P1Z9 1646 aa14.77□□□□□ -0.04
TVP23C-208ENST00000581273 PABPN1Q86U42 306 aaKnown RBP eCLIP14.65□□□□□ -0.06
TVP23C-208ENST00000581273 PLPPR3Q6T4P5 718 aa14.64□□□□□ -0.07
TVP23C-208ENST00000581273 RB1CC1Q8TDY2 1594 aa14.52□□□□□ -0.08
TVP23C-208ENST00000581273 CECR2Q9BXF3 1484 aa14.36□□□□□ -0.11
TVP23C-208ENST00000581273 UNC13AQ9UPW8 1703 aa14.29□□□□□ -0.12
TVP23C-208ENST00000581273 TRIM41Q8WV44 630 aa14.25□□□□□ -0.13
TVP23C-208ENST00000581273 CC2D2AQ9P2K1 1620 aa14.24□□□□□ -0.13
TVP23C-208ENST00000581273 BICRAQ9NZM4 1560 aa14.21□□□□□ -0.14
TVP23C-208ENST00000581273 FOXD1Q16676 465 aa14.16□□□□□ -0.14
TVP23C-208ENST00000581273 NACADO15069 1562 aa14.15□□□□□ -0.14
TVP23C-208ENST00000581273 DCAF8L2P0C7V8 631 aa14.1□□□□□ -0.15
TVP23C-208ENST00000581273 CUX2O14529 1486 aa13.99□□□□□ -0.17
TVP23C-208ENST00000581273 EIF4G1Q04637 1599 aaKnown RBP13.92□□□□□ -0.18
TVP23C-208ENST00000581273 PPP6R1Q9UPN7 881 aa13.83□□□□□ -0.2
TVP23C-208ENST00000581273 ADRA2BP18089 450 aa13.78□□□□□ -0.2
TVP23C-208ENST00000581273 ERCC6Q03468 1493 aa13.74□□□□□ -0.21
TVP23C-208ENST00000581273 SHROOM4Q9ULL8 1493 aa13.74□□□□□ -0.21
TVP23C-208ENST00000581273 MYO15BQ96JP2 1530 aa13.67□□□□□ -0.22
TVP23C-208ENST00000581273 SCRIBQ14160 1630 aa13.54□□□□□ -0.24
TVP23C-208ENST00000581273 ZCCHC6Q5VYS8 1495 aaKnown RBP13.5□□□□□ -0.25
TVP23C-208ENST00000581273 DCAF1Q9Y4B6 1507 aa13.44□□□□□ -0.26
TVP23C-208ENST00000581273 PIAS4Q8N2W9 510 aaPredicted RBP13.36□□□□□ -0.27
TVP23C-208ENST00000581273 THOC2Q8NI27 1593 aaKnown RBP13.36□□□□□ -0.27
TVP23C-208ENST00000581273 NESP48681 1621 aa13.35□□□□□ -0.27
TVP23C-208ENST00000581273 ILDR1Q86SU0 546 aaPredicted RBP13.3□□□□□ -0.28
TVP23C-208ENST00000581273 TRHP20396 242 aaPredicted RBP13.26□□□□□ -0.29
TVP23C-208ENST00000581273 OSCARQ8IYS5 282 aa13.23□□□□□ -0.29
TVP23C-208ENST00000581273 SMARCA2P51531 1590 aa13.22□□□□□ -0.29
TVP23C-208ENST00000581273 RIMBP3CA6NJZ7 1639 aa13.21□□□□□ -0.29
TVP23C-208ENST00000581273 RIMBP3BA6NNM3 1639 aa13.21□□□□□ -0.29
TVP23C-208ENST00000581273 RIMBP3Q9UFD9 1639 aa13.21□□□□□ -0.29
TVP23C-208ENST00000581273 BAZ1AQ9NRL2 1556 aaPredicted RBP13.21□□□□□ -0.29
TVP23C-208ENST00000581273 KIF21AQ7Z4S6 1674 aa13.12□□□□□ -0.31
TVP23C-208ENST00000581273 NCAPD3P42695 1498 aa13.1□□□□□ -0.31
TVP23C-208ENST00000581273 CYB5RLQ6IPT4 315 aa13.06□□□□□ -0.32
TVP23C-208ENST00000581273 ARHGEF11O15085 1522 aa13.03□□□□□ -0.32
TVP23C-208ENST00000581273 MSH5O43196 834 aa12.97□□□□□ -0.33
TVP23C-208ENST00000581273 LAMC3Q9Y6N6 1575 aa12.95□□□□□ -0.34
TVP23C-208ENST00000581273 ATAD2BQ9ULI0 1458 aa12.95□□□□□ -0.34
TVP23C-208ENST00000581273 PDS5BQ9NTI5 1447 aa12.93□□□□□ -0.34
TVP23C-208ENST00000581273 MRC2Q9UBG0 1479 aa12.91□□□□□ -0.34
TVP23C-208ENST00000581273 PPP4R3CPQ6ZMV5 832 aa12.91□□□□□ -0.34
TVP23C-208ENST00000581273 WDR62O43379 1518 aa12.9□□□□□ -0.34
TVP23C-208ENST00000581273 KCNA4P22459 653 aa12.9□□□□□ -0.34
TVP23C-208ENST00000581273 HMGXB3Q12766 1538 aa12.88□□□□□ -0.35
TVP23C-208ENST00000581273 ARAP1Q96P48 1450 aa12.86□□□□□ -0.35
TVP23C-208ENST00000581273 SMARCA4P51532 1647 aa12.84□□□□□ -0.35
TVP23C-208ENST00000581273 BAZ1BQ9UIG0 1483 aaKnown RBP12.78□□□□□ -0.36
TVP23C-208ENST00000581273 CADPSQ9ULU8 1353 aa12.68□□□□□ -0.38
TVP23C-208ENST00000581273 MROH2BQ7Z745 1585 aa12.65□□□□□ -0.38
TVP23C-208ENST00000581273 CEP164Q9UPV0 1460 aa12.65□□□□□ -0.38
TVP23C-208ENST00000581273 PEG3Q9GZU2 1588 aa12.64□□□□□ -0.39
TVP23C-208ENST00000581273 NCBP3Q53F19 620 aaKnown RBP12.63□□□□□ -0.39
TVP23C-208ENST00000581273 SCAF1Q9H7N4 1312 aaKnown RBP12.62□□□□□ -0.39
TVP23C-208ENST00000581273 KDM4FA0A1W2PPD8 638 aa12.6□□□□□ -0.39
TVP23C-208ENST00000581273 ZNF608Q9ULD9 1512 aaPredicted RBP12.59□□□□□ -0.39
TVP23C-208ENST00000581273 PELP1Q8IZL8 1130 aaKnown RBP12.58□□□□□ -0.4
TVP23C-208ENST00000581273 CHD1O14646 1710 aa12.57□□□□□ -0.4
TVP23C-208ENST00000581273 RSF1Q96T23 1441 aaPredicted RBP12.56□□□□□ -0.4
TVP23C-208ENST00000581273 FANCD2Q9BXW9 1451 aa12.55□□□□□ -0.4
TVP23C-208ENST00000581273 URB2Q14146 1524 aaKnown RBP12.55□□□□□ -0.4
TVP23C-208ENST00000581273 WIZO95785 1651 aa12.53□□□□□ -0.4
TVP23C-208ENST00000581273 CNKSR2Q8WXI2 1034 aa12.52□□□□□ -0.41
TVP23C-208ENST00000581273 LMTK3Q96Q04 1460 aa12.52□□□□□ -0.41
TVP23C-208ENST00000581273 FBLN2P98095 1184 aa12.5□□□□□ -0.41
TVP23C-208ENST00000581273 FBXO41Q8TF61 875 aa12.49□□□□□ -0.41
TVP23C-208ENST00000581273 NPM3O75607 178 aaKnown RBP12.48□□□□□ -0.41
TVP23C-208ENST00000581273 SOCS7O14512 581 aa12.45□□□□□ -0.42
TVP23C-208ENST00000581273 MAPK8IP2Q13387 824 aaPredicted RBP12.43□□□□□ -0.42
TVP23C-208ENST00000581273 ILDR2Q71H61 639 aa12.43□□□□□ -0.42
TVP23C-208ENST00000581273 ERCC6L2Q5T890 1561 aa12.43□□□□□ -0.42
TVP23C-208ENST00000581273 EIF4G3O43432 1585 aaKnown RBP12.42□□□□□ -0.42
TVP23C-208ENST00000581273 IFT140Q96RY7 1462 aa12.41□□□□□ -0.42
TVP23C-208ENST00000581273 HECW2Q9P2P5 1572 aa12.39□□□□□ -0.43
TVP23C-208ENST00000581273 AQRO60306 1485 aaKnown RBP eCLIP12.34□□□□□ -0.43
TVP23C-208ENST00000581273 CFTRP13569 1480 aa12.34□□□□□ -0.43
TVP23C-208ENST00000581273 HRCP23327 699 aa12.34□□□□□ -0.43
TVP23C-208ENST00000581273 KIF13AQ9H1H9 1805 aa12.34□□□□□ -0.43
TVP23C-208ENST00000581273 CLASP1Q7Z460 1538 aa12.33□□□□□ -0.44
TVP23C-208ENST00000581273 MYT1Q01538 1121 aa12.33□□□□□ -0.44
TVP23C-208ENST00000581273 GAPVD1Q14C86 1478 aa12.31□□□□□ -0.44
TVP23C-208ENST00000581273 SLC4A1APQ9BWU0 796 aaKnown RBP12.3□□□□□ -0.44
TVP23C-208ENST00000581273 TOP2AP11388 1531 aaKnown RBP12.29□□□□□ -0.44
TVP23C-208ENST00000581273 DMRT2Q9Y5R5 561 aa12.28□□□□□ -0.44
TVP23C-208ENST00000581273 PRDM2Q13029 1718 aa12.27□□□□□ -0.45
TVP23C-208ENST00000581273 DISP3Q9P2K9 1392 aa12.25□□□□□ -0.45
TVP23C-208ENST00000581273 SYNJ2O15056 1496 aa12.24□□□□□ -0.45
TVP23C-208ENST00000581273 RNF216Q9NWF9 866 aaPredicted RBP12.23□□□□□ -0.45
TVP23C-208ENST00000581273 SYNJ1O43426 1573 aa12.22□□□□□ -0.45
TVP23C-208ENST00000581273 ADGRL1O94910 1474 aa12.21□□□□□ -0.45
TVP23C-208ENST00000581273 TOPBP1Q92547 1522 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 6.3 ms