RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 NISCHQ9Y2I1 1504 aa28.89■■■□□ 2.22
ITGB4-207ENST00000580542 CCDC180Q9P1Z9 1646 aa25.31■■□□□ 1.64
ITGB4-207ENST00000580542 ZCCHC6Q5VYS8 1495 aaKnown RBP24.3■■□□□ 1.48
ITGB4-207ENST00000580542 DCAF1Q9Y4B6 1507 aa24.02■■□□□ 1.44
ITGB4-207ENST00000580542 MYO15BQ96JP2 1530 aa23.77■■□□□ 1.4
ITGB4-207ENST00000580542 ABCC9O60706 1549 aa23.67■■□□□ 1.38
ITGB4-207ENST00000580542 NACADO15069 1562 aa23.51■■□□□ 1.35
ITGB4-207ENST00000580542 DCAF8L2P0C7V8 631 aa23.45■■□□□ 1.34
ITGB4-207ENST00000580542 PELP1Q8IZL8 1130 aaKnown RBP23.4■■□□□ 1.34
ITGB4-207ENST00000580542 RB1CC1Q8TDY2 1594 aa23.27■■□□□ 1.32
ITGB4-207ENST00000580542 SHROOM4Q9ULL8 1493 aa23.25■■□□□ 1.31
ITGB4-207ENST00000580542 HRCP23327 699 aa23.12■■□□□ 1.29
ITGB4-207ENST00000580542 SCRIBQ14160 1630 aa23.08■■□□□ 1.28
ITGB4-207ENST00000580542 UNC13AQ9UPW8 1703 aa22.88■■□□□ 1.25
ITGB4-207ENST00000580542 MYT1Q01538 1121 aa22.71■■□□□ 1.23
ITGB4-207ENST00000580542 SUPT5HO00267 1087 aaKnown RBP22.63■■□□□ 1.21
ITGB4-207ENST00000580542 PPARGC1BQ86YN6 1023 aaKnown RBP22.63■■□□□ 1.21
ITGB4-207ENST00000580542 BICRAQ9NZM4 1560 aa22.63■■□□□ 1.21
ITGB4-207ENST00000580542 CECR2Q9BXF3 1484 aa22.37■■□□□ 1.17
ITGB4-207ENST00000580542 PCGF6Q9BYE7 350 aa22.37■■□□□ 1.17
ITGB4-207ENST00000580542 RSF1Q96T23 1441 aaPredicted RBP22.36■■□□□ 1.17
ITGB4-207ENST00000580542 BAZ1AQ9NRL2 1556 aaPredicted RBP22.31■■□□□ 1.16
ITGB4-207ENST00000580542 MROH2BQ7Z745 1585 aa22.28■■□□□ 1.16
ITGB4-207ENST00000580542 SCAF1Q9H7N4 1312 aaKnown RBP22.26■■□□□ 1.15
ITGB4-207ENST00000580542 PABPN1Q86U42 306 aaKnown RBP eCLIP22.24■■□□□ 1.15
ITGB4-207ENST00000580542 SMARCA4P51532 1647 aa22.22■■□□□ 1.15
ITGB4-207ENST00000580542 CHIC1Q5VXU3 224 aa22.15■■□□□ 1.14
ITGB4-207ENST00000580542 WIZO95785 1651 aa22.09■■□□□ 1.13
ITGB4-207ENST00000580542 PEG3Q9GZU2 1588 aa22.06■■□□□ 1.12
ITGB4-207ENST00000580542 TOP2AP11388 1531 aaKnown RBP21.92■■□□□ 1.1
ITGB4-207ENST00000580542 EIF4G1Q04637 1599 aaKnown RBP21.89■■□□□ 1.09
ITGB4-207ENST00000580542 SMARCA2P51531 1590 aa21.84■■□□□ 1.09
ITGB4-207ENST00000580542 ATAD2BQ9ULI0 1458 aa21.83■■□□□ 1.08
ITGB4-207ENST00000580542 HMGXB3Q12766 1538 aa21.69■■□□□ 1.06
ITGB4-207ENST00000580542 NCAPD3P42695 1498 aa21.68■■□□□ 1.06
ITGB4-207ENST00000580542 BAZ1BQ9UIG0 1483 aaKnown RBP21.65■■□□□ 1.06
ITGB4-207ENST00000580542 CCDC88BA6NC98 1476 aa21.63■■□□□ 1.05
ITGB4-207ENST00000580542 CC2D2AQ9P2K1 1620 aa21.55■■□□□ 1.04
ITGB4-207ENST00000580542 ACIN1Q9UKV3 1341 aaKnown RBP21.52■■□□□ 1.04
ITGB4-207ENST00000580542 ZEB1P37275 1124 aaPredicted RBP21.5■■□□□ 1.03
ITGB4-207ENST00000580542 LOC105371045A0A1W2PR82 267 aa21.49■■□□□ 1.03
ITGB4-207ENST00000580542 TTBK1Q5TCY1 1321 aaPredicted RBP21.48■■□□□ 1.03
ITGB4-207ENST00000580542 TRIM26Q12899 539 aaPredicted RBP21.42■■□□□ 1.02
ITGB4-207ENST00000580542 NEUROD1Q13562 356 aa21.42■■□□□ 1.02
ITGB4-207ENST00000580542 GTF3C3Q9Y5Q9 886 aa21.42■■□□□ 1.02
ITGB4-207ENST00000580542 CENPBP07199 599 aaPredicted RBP21.22■□□□□ 0.99
ITGB4-207ENST00000580542 CFTRP13569 1480 aa21.18■□□□□ 0.98
ITGB4-207ENST00000580542 PRDM2Q13029 1718 aa21.18■□□□□ 0.98
ITGB4-207ENST00000580542 BCL11AQ9H165 835 aa21.14■□□□□ 0.97
ITGB4-207ENST00000580542 ABCC8Q09428 1581 aa21.12■□□□□ 0.97
ITGB4-207ENST00000580542 TRIM41Q8WV44 630 aa21.07■□□□□ 0.96
ITGB4-207ENST00000580542 CADPSQ9ULU8 1353 aa21.05■□□□□ 0.96
ITGB4-207ENST00000580542 WRNQ14191 1432 aaPredicted RBP eCLIP21.01■□□□□ 0.95
ITGB4-207ENST00000580542 SYNJ1O43426 1573 aa20.98■□□□□ 0.95
ITGB4-207ENST00000580542 BIVM-ERCC5R4GMW8 1640 aa20.96■□□□□ 0.95
ITGB4-207ENST00000580542 LAMC3Q9Y6N6 1575 aa20.96■□□□□ 0.95
ITGB4-207ENST00000580542 TOP2BQ02880 1626 aa20.94■□□□□ 0.94
ITGB4-207ENST00000580542 FAM9AQ8IZU1 332 aaPredicted RBP20.93■□□□□ 0.94
ITGB4-207ENST00000580542 DNAJC5BQ9UF47 199 aa20.89■□□□□ 0.93
ITGB4-207ENST00000580542 CUX1P39880 1505 aa20.85■□□□□ 0.93
ITGB4-207ENST00000580542 NESP48681 1621 aa20.83■□□□□ 0.92
ITGB4-207ENST00000580542 DIEXFQ68CQ4 756 aaKnown RBP20.81■□□□□ 0.92
ITGB4-207ENST00000580542 FANCD2Q9BXW9 1451 aa20.81■□□□□ 0.92
ITGB4-207ENST00000580542 PRKCSHP14314 528 aaPredicted RBP20.8■□□□□ 0.92
ITGB4-207ENST00000580542 EEA1Q15075 1411 aa20.76■□□□□ 0.91
ITGB4-207ENST00000580542 EHMT2Q96KQ7 1210 aa20.72■□□□□ 0.91
ITGB4-207ENST00000580542 SOGA1O94964 1423 aa20.71■□□□□ 0.91
ITGB4-207ENST00000580542 PDS5BQ9NTI5 1447 aa20.7■□□□□ 0.9
ITGB4-207ENST00000580542 DNMBPQ6XZF7 1577 aa20.69■□□□□ 0.9
ITGB4-207ENST00000580542 ANP32EQ9BTT0 268 aa20.69■□□□□ 0.9
ITGB4-207ENST00000580542 CEP164Q9UPV0 1460 aa20.68■□□□□ 0.9
ITGB4-207ENST00000580542 KIF21AQ7Z4S6 1674 aa20.67■□□□□ 0.9
ITGB4-207ENST00000580542 RUSC2Q8N2Y8 1516 aa20.64■□□□□ 0.89
ITGB4-207ENST00000580542 YTHDC1Q96MU7 727 aaKnown RBP20.62■□□□□ 0.89
ITGB4-207ENST00000580542 TOPBP1Q92547 1522 aa20.62■□□□□ 0.89
ITGB4-207ENST00000580542 URB2Q14146 1524 aaKnown RBP20.59■□□□□ 0.89
ITGB4-207ENST00000580542 FGD5Q6ZNL6 1462 aa20.58■□□□□ 0.88
ITGB4-207ENST00000580542 KIF21BO75037 1637 aa20.54■□□□□ 0.88
ITGB4-207ENST00000580542 CSRNP3Q8WYN3 585 aa20.51■□□□□ 0.87
ITGB4-207ENST00000580542 POLA1P09884 1462 aaPredicted RBP20.51■□□□□ 0.87
ITGB4-207ENST00000580542 CCER1Q8TC90 406 aaPredicted RBP20.5■□□□□ 0.87
ITGB4-207ENST00000580542 WDR97A6NE52 1622 aa20.49■□□□□ 0.87
ITGB4-207ENST00000580542 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.47■□□□□ 0.87
ITGB4-207ENST00000580542 KIF27Q86VH2 1401 aa20.47■□□□□ 0.87
ITGB4-207ENST00000580542 ABCA10Q8WWZ4 1543 aa20.47■□□□□ 0.87
ITGB4-207ENST00000580542 MRC2Q9UBG0 1479 aa20.47■□□□□ 0.87
ITGB4-207ENST00000580542 WDR62O43379 1518 aa20.43■□□□□ 0.86
ITGB4-207ENST00000580542 GOLGA3Q08378 1498 aa20.42■□□□□ 0.86
ITGB4-207ENST00000580542 PRXQ9BXM0 1461 aa20.41■□□□□ 0.86
ITGB4-207ENST00000580542 ERICH3Q5RHP9 1530 aa20.41■□□□□ 0.86
ITGB4-207ENST00000580542 CUX2O14529 1486 aa20.39■□□□□ 0.85
ITGB4-207ENST00000580542 ERICH6Q7L0X2 663 aa20.39■□□□□ 0.85
ITGB4-207ENST00000580542 THOC2Q8NI27 1593 aaKnown RBP20.39■□□□□ 0.85
ITGB4-207ENST00000580542 TARBP1Q13395 1621 aaKnown RBP20.38■□□□□ 0.85
ITGB4-207ENST00000580542 RAD54L2Q9Y4B4 1467 aa20.37■□□□□ 0.85
ITGB4-207ENST00000580542 TNIKQ9UKE5 1360 aa20.36■□□□□ 0.85
ITGB4-207ENST00000580542 ABCA5Q8WWZ7 1642 aa20.34■□□□□ 0.85
ITGB4-207ENST00000580542 IGF1RP08069 1367 aa20.31■□□□□ 0.84
ITGB4-207ENST00000580542 RAPGEF2Q9Y4G8 1499 aa20.31■□□□□ 0.84
ITGB4-207ENST00000580542 ERCC6Q03468 1493 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms