RNA–Protein interactions for RNA: ENST00000578010.1

PPP4R1-207, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 3

Gene PPP4R1, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-207ENST00000578010 AEBP2Q6ZN18 517 aaPredicted RBP18.11■□□□□ 0.49
PPP4R1-207ENST00000578010 CHIC1Q5VXU3 224 aa17.58■□□□□ 0.4
PPP4R1-207ENST00000578010 NISCHQ9Y2I1 1504 aa15.78■□□□□ 0.12
PPP4R1-207ENST00000578010 SENP3Q9H4L4 574 aaPredicted RBP15.49■□□□□ 0.07
PPP4R1-207ENST00000578010 PHF23Q9BUL5 403 aaPredicted RBP15.39■□□□□ 0.05
PPP4R1-207ENST00000578010 FOXD1Q16676 465 aa14.33□□□□□ -0.12
PPP4R1-207ENST00000578010 PLPPR3Q6T4P5 718 aa14.22□□□□□ -0.13
PPP4R1-207ENST00000578010 CCDC180Q9P1Z9 1646 aa14.1□□□□□ -0.15
PPP4R1-207ENST00000578010 ABCC9O60706 1549 aa13.78□□□□□ -0.2
PPP4R1-207ENST00000578010 PPP6R1Q9UPN7 881 aa13.62□□□□□ -0.23
PPP4R1-207ENST00000578010 ADRA2BP18089 450 aa13.57□□□□□ -0.24
PPP4R1-207ENST00000578010 PIAS4Q8N2W9 510 aaPredicted RBP13.46□□□□□ -0.25
PPP4R1-207ENST00000578010 DCAF8L2P0C7V8 631 aa13.39□□□□□ -0.27
PPP4R1-207ENST00000578010 MSH5O43196 834 aa13.37□□□□□ -0.27
PPP4R1-207ENST00000578010 RB1CC1Q8TDY2 1594 aa13.26□□□□□ -0.29
PPP4R1-207ENST00000578010 NACADO15069 1562 aa13.2□□□□□ -0.3
PPP4R1-207ENST00000578010 ZCCHC6Q5VYS8 1495 aaKnown RBP13.16□□□□□ -0.3
PPP4R1-207ENST00000578010 MYO15BQ96JP2 1530 aa13.06□□□□□ -0.32
PPP4R1-207ENST00000578010 DCAF1Q9Y4B6 1507 aa13.02□□□□□ -0.33
PPP4R1-207ENST00000578010 UNC13AQ9UPW8 1703 aa13.01□□□□□ -0.33
PPP4R1-207ENST00000578010 SCRIBQ14160 1630 aa12.9□□□□□ -0.34
PPP4R1-207ENST00000578010 PABPN1Q86U42 306 aaKnown RBP eCLIP12.84□□□□□ -0.35
PPP4R1-207ENST00000578010 BICRAQ9NZM4 1560 aa12.8□□□□□ -0.36
PPP4R1-207ENST00000578010 SHROOM4Q9ULL8 1493 aa12.65□□□□□ -0.38
PPP4R1-207ENST00000578010 SCAF1Q9H7N4 1312 aaKnown RBP12.56□□□□□ -0.4
PPP4R1-207ENST00000578010 DNAJC5BQ9UF47 199 aa12.52□□□□□ -0.41
PPP4R1-207ENST00000578010 EIF4G1Q04637 1599 aaKnown RBP12.5□□□□□ -0.41
PPP4R1-207ENST00000578010 CC2D2AQ9P2K1 1620 aa12.47□□□□□ -0.41
PPP4R1-207ENST00000578010 PPP4R3CPQ6ZMV5 832 aa12.46□□□□□ -0.41
PPP4R1-207ENST00000578010 POTEDQ86YR6 584 aa12.42□□□□□ -0.42
PPP4R1-207ENST00000578010 CECR2Q9BXF3 1484 aa12.36□□□□□ -0.43
PPP4R1-207ENST00000578010 MAPK8IP2Q13387 824 aaPredicted RBP12.35□□□□□ -0.43
PPP4R1-207ENST00000578010 DMRT2Q9Y5R5 561 aa12.32□□□□□ -0.44
PPP4R1-207ENST00000578010 SMARCA4P51532 1647 aa12.29□□□□□ -0.44
PPP4R1-207ENST00000578010 BAZ1AQ9NRL2 1556 aaPredicted RBP12.26□□□□□ -0.45
PPP4R1-207ENST00000578010 CNKSR2Q8WXI2 1034 aa12.2□□□□□ -0.46
PPP4R1-207ENST00000578010 SMARCA2P51531 1590 aa12.2□□□□□ -0.46
PPP4R1-207ENST00000578010 ATAD2BQ9ULI0 1458 aa12.17□□□□□ -0.46
PPP4R1-207ENST00000578010 MROH2BQ7Z745 1585 aa12.17□□□□□ -0.46
PPP4R1-207ENST00000578010 NCBP3Q53F19 620 aaKnown RBP12.14□□□□□ -0.47
PPP4R1-207ENST00000578010 HMGXB3Q12766 1538 aa12.13□□□□□ -0.47
PPP4R1-207ENST00000578010 NCAPD3P42695 1498 aa12.13□□□□□ -0.47
PPP4R1-207ENST00000578010 BAZ1BQ9UIG0 1483 aaKnown RBP12.13□□□□□ -0.47
PPP4R1-207ENST00000578010 PEG3Q9GZU2 1588 aa12.11□□□□□ -0.47
PPP4R1-207ENST00000578010 WIZO95785 1651 aa12.1□□□□□ -0.47
PPP4R1-207ENST00000578010 SUPT5HO00267 1087 aaKnown RBP12.04□□□□□ -0.48
PPP4R1-207ENST00000578010 HOXD11P31277 338 aaPredicted RBP12.02□□□□□ -0.49
PPP4R1-207ENST00000578010 RSF1Q96T23 1441 aaPredicted RBP12.02□□□□□ -0.49
PPP4R1-207ENST00000578010 RNF216Q9NWF9 866 aaPredicted RBP12.01□□□□□ -0.49
PPP4R1-207ENST00000578010 TOP2AP11388 1531 aaKnown RBP11.94□□□□□ -0.5
PPP4R1-207ENST00000578010 ERCC6Q03468 1493 aa11.92□□□□□ -0.5
PPP4R1-207ENST00000578010 KCNA4P22459 653 aa11.91□□□□□ -0.5
PPP4R1-207ENST00000578010 NESP48681 1621 aa11.9□□□□□ -0.5
PPP4R1-207ENST00000578010 LAMC3Q9Y6N6 1575 aa11.89□□□□□ -0.51
PPP4R1-207ENST00000578010 NPM3O75607 178 aaKnown RBP11.89□□□□□ -0.51
PPP4R1-207ENST00000578010 KIF21AQ7Z4S6 1674 aa11.84□□□□□ -0.51
PPP4R1-207ENST00000578010 CADPSQ9ULU8 1353 aa11.79□□□□□ -0.52
PPP4R1-207ENST00000578010 PDS5BQ9NTI5 1447 aa11.78□□□□□ -0.52
PPP4R1-207ENST00000578010 PRDM2Q13029 1718 aa11.78□□□□□ -0.52
PPP4R1-207ENST00000578010 CCDC88BA6NC98 1476 aa11.76□□□□□ -0.53
PPP4R1-207ENST00000578010 THOC2Q8NI27 1593 aaKnown RBP11.75□□□□□ -0.53
PPP4R1-207ENST00000578010 CUX2O14529 1486 aa11.72□□□□□ -0.53
PPP4R1-207ENST00000578010 CFTRP13569 1480 aa11.72□□□□□ -0.53
PPP4R1-207ENST00000578010 CEP164Q9UPV0 1460 aa11.72□□□□□ -0.53
PPP4R1-207ENST00000578010 FANCD2Q9BXW9 1451 aa11.7□□□□□ -0.54
PPP4R1-207ENST00000578010 DCAF8L1A6NGE4 600 aa11.69□□□□□ -0.54
PPP4R1-207ENST00000578010 MRC2Q9UBG0 1479 aa11.69□□□□□ -0.54
PPP4R1-207ENST00000578010 WDR62O43379 1518 aa11.64□□□□□ -0.55
PPP4R1-207ENST00000578010 URB2Q14146 1524 aaKnown RBP11.57□□□□□ -0.56
PPP4R1-207ENST00000578010 DNMBPQ6XZF7 1577 aa11.53□□□□□ -0.56
PPP4R1-207ENST00000578010 TOPBP1Q92547 1522 aa11.52□□□□□ -0.57
PPP4R1-207ENST00000578010 ABCC8Q09428 1581 aa11.5□□□□□ -0.57
PPP4R1-207ENST00000578010 IFT140Q96RY7 1462 aa11.44□□□□□ -0.58
PPP4R1-207ENST00000578010 CUX1P39880 1505 aa11.43□□□□□ -0.58
PPP4R1-207ENST00000578010 POLA1P09884 1462 aaPredicted RBP11.41□□□□□ -0.58
PPP4R1-207ENST00000578010 FGD5Q6ZNL6 1462 aa11.41□□□□□ -0.58
PPP4R1-207ENST00000578010 RNF39Q9H2S5 420 aa11.41□□□□□ -0.58
PPP4R1-207ENST00000578010 EIF4G3O43432 1585 aaKnown RBP11.41□□□□□ -0.58
PPP4R1-207ENST00000578010 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.39□□□□□ -0.59
PPP4R1-207ENST00000578010 TARBP1Q13395 1621 aaKnown RBP11.38□□□□□ -0.59
PPP4R1-207ENST00000578010 ZNF608Q9ULD9 1512 aaPredicted RBP11.38□□□□□ -0.59
PPP4R1-207ENST00000578010 BIVM-ERCC5R4GMW8 1640 aa11.37□□□□□ -0.59
PPP4R1-207ENST00000578010 RAD54L2Q9Y4B4 1467 aa11.37□□□□□ -0.59
PPP4R1-207ENST00000578010 WRNQ14191 1432 aaPredicted RBP eCLIP11.36□□□□□ -0.59
PPP4R1-207ENST00000578010 SYNJ1O43426 1573 aa11.36□□□□□ -0.59
PPP4R1-207ENST00000578010 SOGA1O94964 1423 aa11.35□□□□□ -0.59
PPP4R1-207ENST00000578010 WDR97A6NE52 1622 aa11.35□□□□□ -0.59
PPP4R1-207ENST00000578010 TOP2BQ02880 1626 aa11.35□□□□□ -0.59
PPP4R1-207ENST00000578010 TRIM41Q8WV44 630 aa11.34□□□□□ -0.59
PPP4R1-207ENST00000578010 SLC4A1APQ9BWU0 796 aaKnown RBP11.34□□□□□ -0.59
PPP4R1-207ENST00000578010 PBRM1Q86U86 1689 aa11.32□□□□□ -0.6
PPP4R1-207ENST00000578010 AQRO60306 1485 aaKnown RBP eCLIP11.32□□□□□ -0.61e-10■■■■■ 53.5
PPP4R1-207ENST00000578010 C1QBPQ07021 282 aaKnown RBP11.3□□□□□ -0.6
PPP4R1-207ENST00000578010 TDRD9Q8NDG6 1382 aaKnown RBP11.29□□□□□ -0.6
PPP4R1-207ENST00000578010 CHD1O14646 1710 aa11.29□□□□□ -0.6
PPP4R1-207ENST00000578010 DNAJC5Q9H3Z4 198 aa11.29□□□□□ -0.6
PPP4R1-207ENST00000578010 ABCA10Q8WWZ4 1543 aa11.26□□□□□ -0.61
PPP4R1-207ENST00000578010 SLC4A2P04920 1241 aa11.26□□□□□ -0.61
PPP4R1-207ENST00000578010 ABCA5Q8WWZ7 1642 aa11.26□□□□□ -0.61
PPP4R1-207ENST00000578010 SNAPC4Q5SXM2 1469 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 206.7 ms