RNA–Protein interactions for RNA: ENST00000575815.5

NCBP3-205, Transcript of nuclear cap binding subunit 3, humanhuman

TSL 2

Gene NCBP3, Length 4,096 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3-205ENST00000575815 NISCHQ9Y2I1 1504 aa16.87■□□□□ 0.29
NCBP3-205ENST00000575815 DCAF8L2P0C7V8 631 aa15.78■□□□□ 0.12
NCBP3-205ENST00000575815 SHROOM4Q9ULL8 1493 aa15.06■□□□□ 0
NCBP3-205ENST00000575815 SUPT5HO00267 1087 aaKnown RBP14.8□□□□□ -0.04
NCBP3-205ENST00000575815 ABCC9O60706 1549 aa14.48□□□□□ -0.09
NCBP3-205ENST00000575815 CCDC180Q9P1Z9 1646 aa14.14□□□□□ -0.15
NCBP3-205ENST00000575815 PABPN1Q86U42 306 aaKnown RBP eCLIP14.09□□□□□ -0.15
NCBP3-205ENST00000575815 ZCCHC6Q5VYS8 1495 aaKnown RBP14.02□□□□□ -0.16
NCBP3-205ENST00000575815 EHMT2Q96KQ7 1210 aa14.01□□□□□ -0.17
NCBP3-205ENST00000575815 FAM9AQ8IZU1 332 aaPredicted RBP13.85□□□□□ -0.19
NCBP3-205ENST00000575815 SCRIBQ14160 1630 aa13.78□□□□□ -0.2
NCBP3-205ENST00000575815 TRIM41Q8WV44 630 aa13.71□□□□□ -0.22
NCBP3-205ENST00000575815 RB1CC1Q8TDY2 1594 aa13.57□□□□□ -0.24
NCBP3-205ENST00000575815 CHIC1Q5VXU3 224 aa13.56□□□□□ -0.24
NCBP3-205ENST00000575815 NACADO15069 1562 aa13.55□□□□□ -0.24
NCBP3-205ENST00000575815 RANGAP1P46060 587 aaPredicted RBP13.51□□□□□ -0.25
NCBP3-205ENST00000575815 DCAF1Q9Y4B6 1507 aa13.49□□□□□ -0.25
NCBP3-205ENST00000575815 LOC105371045A0A1W2PR82 267 aa13.41□□□□□ -0.26
NCBP3-205ENST00000575815 TTBK1Q5TCY1 1321 aaPredicted RBP13.39□□□□□ -0.27
NCBP3-205ENST00000575815 UBTFP17480 764 aaKnown RBP13.36□□□□□ -0.27
NCBP3-205ENST00000575815 CECR2Q9BXF3 1484 aa13.35□□□□□ -0.27
NCBP3-205ENST00000575815 RSF1Q96T23 1441 aaPredicted RBP13.33□□□□□ -0.28
NCBP3-205ENST00000575815 MYO15BQ96JP2 1530 aa13.23□□□□□ -0.29
NCBP3-205ENST00000575815 PPARGC1BQ86YN6 1023 aaKnown RBP13.22□□□□□ -0.29
NCBP3-205ENST00000575815 APLP2Q06481 763 aa13.2□□□□□ -0.3
NCBP3-205ENST00000575815 PCGF6Q9BYE7 350 aa13.18□□□□□ -0.3
NCBP3-205ENST00000575815 ATP1B4Q9UN42 357 aaPredicted RBP13.17□□□□□ -0.3
NCBP3-205ENST00000575815 MROH2BQ7Z745 1585 aa13.14□□□□□ -0.31
NCBP3-205ENST00000575815 BAZ1AQ9NRL2 1556 aaPredicted RBP13.08□□□□□ -0.31
NCBP3-205ENST00000575815 BAZ1BQ9UIG0 1483 aaKnown RBP13.04□□□□□ -0.32
NCBP3-205ENST00000575815 WIZO95785 1651 aa12.96□□□□□ -0.34
NCBP3-205ENST00000575815 CSRNP3Q8WYN3 585 aa12.95□□□□□ -0.34
NCBP3-205ENST00000575815 FBLN2P98095 1184 aa12.92□□□□□ -0.34
NCBP3-205ENST00000575815 CCDC88BA6NC98 1476 aa12.89□□□□□ -0.35
NCBP3-205ENST00000575815 ATAD2BQ9ULI0 1458 aa12.85□□□□□ -0.35
NCBP3-205ENST00000575815 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.84□□□□□ -0.35
NCBP3-205ENST00000575815 HNRNPUL2Q1KMD3 747 aaKnown RBP12.84□□□□□ -0.35
NCBP3-205ENST00000575815 SMARCA4P51532 1647 aa12.84□□□□□ -0.35
NCBP3-205ENST00000575815 P3H3Q8IVL6 736 aa12.83□□□□□ -0.35
NCBP3-205ENST00000575815 WRNQ14191 1432 aaPredicted RBP eCLIP12.8□□□□□ -0.36
NCBP3-205ENST00000575815 SMARCA2P51531 1590 aa12.8□□□□□ -0.36
NCBP3-205ENST00000575815 ITGAEP38570 1179 aa12.79□□□□□ -0.36
NCBP3-205ENST00000575815 TRIM26Q12899 539 aaPredicted RBP12.77□□□□□ -0.36
NCBP3-205ENST00000575815 BICRAQ9NZM4 1560 aa12.76□□□□□ -0.37
NCBP3-205ENST00000575815 TOP2AP11388 1531 aaKnown RBP12.74□□□□□ -0.37
NCBP3-205ENST00000575815 CCER1Q8TC90 406 aaPredicted RBP12.73□□□□□ -0.37
NCBP3-205ENST00000575815 ABCC8Q09428 1581 aa12.73□□□□□ -0.37
NCBP3-205ENST00000575815 ARID3CA6NKF2 412 aa12.73□□□□□ -0.37
NCBP3-205ENST00000575815 EIF4G1Q04637 1599 aaKnown RBP12.71□□□□□ -0.37
NCBP3-205ENST00000575815 DNAJC5BQ9UF47 199 aa12.71□□□□□ -0.38
NCBP3-205ENST00000575815 SOGA1O94964 1423 aa12.67□□□□□ -0.38
NCBP3-205ENST00000575815 CADPSQ9ULU8 1353 aa12.65□□□□□ -0.38
NCBP3-205ENST00000575815 UNC13AQ9UPW8 1703 aa12.63□□□□□ -0.39
NCBP3-205ENST00000575815 ERCC6Q03468 1493 aa12.62□□□□□ -0.39
NCBP3-205ENST00000575815 NCAPD3P42695 1498 aa12.61□□□□□ -0.39
NCBP3-205ENST00000575815 CHMP7Q8WUX9 453 aaPredicted RBP12.58□□□□□ -0.4
NCBP3-205ENST00000575815 FAM50AQ14320 339 aaKnown RBP12.57□□□□□ -0.4
NCBP3-205ENST00000575815 KIF27Q86VH2 1401 aa12.56□□□□□ -0.4
NCBP3-205ENST00000575815 CC2D2AQ9P2K1 1620 aa12.54□□□□□ -0.4
NCBP3-205ENST00000575815 TDRD9Q8NDG6 1382 aaKnown RBP12.54□□□□□ -0.4
NCBP3-205ENST00000575815 PDS5BQ9NTI5 1447 aa12.54□□□□□ -0.4
NCBP3-205ENST00000575815 CUX2O14529 1486 aa12.54□□□□□ -0.4
NCBP3-205ENST00000575815 MYT1LQ9UL68 1186 aa12.51□□□□□ -0.41
NCBP3-205ENST00000575815 EEA1Q15075 1411 aa12.5□□□□□ -0.41
NCBP3-205ENST00000575815 RUSC2Q8N2Y8 1516 aa12.5□□□□□ -0.41
NCBP3-205ENST00000575815 CLIP1P30622 1438 aa12.49□□□□□ -0.41
NCBP3-205ENST00000575815 NESP48681 1621 aa12.49□□□□□ -0.41
NCBP3-205ENST00000575815 FANCD2Q9BXW9 1451 aa12.48□□□□□ -0.41
NCBP3-205ENST00000575815 CEP162Q5TB80 1403 aa12.47□□□□□ -0.41
NCBP3-205ENST00000575815 GOLGA3Q08378 1498 aa12.47□□□□□ -0.41
NCBP3-205ENST00000575815 CARMIL1Q5VZK9 1371 aa12.46□□□□□ -0.42
NCBP3-205ENST00000575815 ZEB1P37275 1124 aaPredicted RBP12.43□□□□□ -0.42
NCBP3-205ENST00000575815 CEP164Q9UPV0 1460 aa12.42□□□□□ -0.42
NCBP3-205ENST00000575815 HRCP23327 699 aa12.42□□□□□ -0.42
NCBP3-205ENST00000575815 TNIKQ9UKE5 1360 aa12.42□□□□□ -0.42
NCBP3-205ENST00000575815 ZNF777Q9ULD5 760 aaPredicted RBP12.39□□□□□ -0.43
NCBP3-205ENST00000575815 CFTRP13569 1480 aa12.38□□□□□ -0.43
NCBP3-205ENST00000575815 HMGXB3Q12766 1538 aa12.37□□□□□ -0.43
NCBP3-205ENST00000575815 RAD54L2Q9Y4B4 1467 aa12.36□□□□□ -0.43
NCBP3-205ENST00000575815 FGD5Q6ZNL6 1462 aa12.32□□□□□ -0.44
NCBP3-205ENST00000575815 RAPGEF2Q9Y4G8 1499 aa12.32□□□□□ -0.44
NCBP3-205ENST00000575815 TRIM52Q96A61 297 aa12.32□□□□□ -0.44
NCBP3-205ENST00000575815 CDK11AQ9UQ88 783 aaPredicted RBP12.32□□□□□ -0.44
NCBP3-205ENST00000575815 SYNJ1O43426 1573 aa12.28□□□□□ -0.44
NCBP3-205ENST00000575815 PEG3Q9GZU2 1588 aa12.28□□□□□ -0.44
NCBP3-205ENST00000575815 NEUROD1Q13562 356 aa12.28□□□□□ -0.44
NCBP3-205ENST00000575815 MTUS2Q5JR59 1369 aa12.28□□□□□ -0.44
NCBP3-205ENST00000575815 IGF1RP08069 1367 aa12.27□□□□□ -0.44
NCBP3-205ENST00000575815 CHIC2Q9UKJ5 165 aa12.27□□□□□ -0.45
NCBP3-205ENST00000575815 KCNH8Q96L42 1107 aa12.27□□□□□ -0.45
NCBP3-205ENST00000575815 AQRO60306 1485 aaKnown RBP eCLIP12.25□□□□□ -0.45
NCBP3-205ENST00000575815 KANK4Q5T7N3 995 aaPredicted RBP12.23□□□□□ -0.45
NCBP3-205ENST00000575815 CUX1P39880 1505 aa12.23□□□□□ -0.45
NCBP3-205ENST00000575815 NPM1P06748 294 aaKnown RBP eCLIP12.22□□□□□ -0.45
NCBP3-205ENST00000575815 GAPVD1Q14C86 1478 aa12.19□□□□□ -0.46
NCBP3-205ENST00000575815 PLEKHD1A6NEE1 506 aa12.18□□□□□ -0.46
NCBP3-205ENST00000575815 TOPBP1Q92547 1522 aa12.18□□□□□ -0.46
NCBP3-205ENST00000575815 JPH4Q96JJ6 628 aa12.17□□□□□ -0.46
NCBP3-205ENST00000575815 POLA1P09884 1462 aaPredicted RBP12.16□□□□□ -0.46
NCBP3-205ENST00000575815 FHOD3Q2V2M9 1422 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 153.4 ms