RNA–Protein interactions for RNA: ENST00000564734.5

HERC2-207, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 2, humanhuman

TSL 1 (best)

Gene HERC2, Length 3,121 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC2-207ENST00000564734 NISCHQ9Y2I1 1504 aa32.11■■■□□ 2.73
HERC2-207ENST00000564734 CCDC180Q9P1Z9 1646 aa27.39■■□□□ 1.98
HERC2-207ENST00000564734 ZCCHC6Q5VYS8 1495 aaKnown RBP27.17■■□□□ 1.94
HERC2-207ENST00000564734 SHROOM4Q9ULL8 1493 aa27.05■■□□□ 1.92
HERC2-207ENST00000564734 DCAF8L2P0C7V8 631 aa26.54■■□□□ 1.84
HERC2-207ENST00000564734 SUPT5HO00267 1087 aaKnown RBP26.49■■□□□ 1.83
HERC2-207ENST00000564734 ABCC9O60706 1549 aa26.49■■□□□ 1.83
HERC2-207ENST00000564734 DCAF1Q9Y4B6 1507 aa26.46■■□□□ 1.83
HERC2-207ENST00000564734 CHIC1Q5VXU3 224 aa25.88■■□□□ 1.73
HERC2-207ENST00000564734 MYO15BQ96JP2 1530 aa25.76■■□□□ 1.71
HERC2-207ENST00000564734 SCRIBQ14160 1630 aa25.49■■□□□ 1.67
HERC2-207ENST00000564734 NACADO15069 1562 aa25.38■■□□□ 1.65
HERC2-207ENST00000564734 RSF1Q96T23 1441 aaPredicted RBP25.36■■□□□ 1.65
HERC2-207ENST00000564734 RB1CC1Q8TDY2 1594 aa25.35■■□□□ 1.65
HERC2-207ENST00000564734 PABPN1Q86U42 306 aaKnown RBP eCLIP25.06■■□□□ 1.6
HERC2-207ENST00000564734 LOC105371045A0A1W2PR82 267 aa25.01■■□□□ 1.59
HERC2-207ENST00000564734 CECR2Q9BXF3 1484 aa24.98■■□□□ 1.59
HERC2-207ENST00000564734 HRCP23327 699 aa24.93■■□□□ 1.58
HERC2-207ENST00000564734 MROH2BQ7Z745 1585 aa24.92■■□□□ 1.58
HERC2-207ENST00000564734 PCGF6Q9BYE7 350 aa24.86■■□□□ 1.57
HERC2-207ENST00000564734 WIZO95785 1651 aa24.76■■□□□ 1.55
HERC2-207ENST00000564734 TRIM41Q8WV44 630 aa24.75■■□□□ 1.55
HERC2-207ENST00000564734 UNC13AQ9UPW8 1703 aa24.75■■□□□ 1.55
HERC2-207ENST00000564734 BAZ1AQ9NRL2 1556 aaPredicted RBP24.67■■□□□ 1.54
HERC2-207ENST00000564734 BICRAQ9NZM4 1560 aa24.54■■□□□ 1.52
HERC2-207ENST00000564734 TRIM26Q12899 539 aaPredicted RBP24.52■■□□□ 1.52
HERC2-207ENST00000564734 EIF4G1Q04637 1599 aaKnown RBP24.52■■□□□ 1.52
HERC2-207ENST00000564734 SMARCA4P51532 1647 aa24.45■■□□□ 1.51
HERC2-207ENST00000564734 TOP2AP11388 1531 aaKnown RBP24.44■■□□□ 1.5
HERC2-207ENST00000564734 FAM9AQ8IZU1 332 aaPredicted RBP24.44■■□□□ 1.5
HERC2-207ENST00000564734 PPARGC1BQ86YN6 1023 aaKnown RBP24.31■■□□□ 1.48
HERC2-207ENST00000564734 CCDC88BA6NC98 1476 aa24.29■■□□□ 1.48
HERC2-207ENST00000564734 SMARCA2P51531 1590 aa24.29■■□□□ 1.48
HERC2-207ENST00000564734 ABCC8Q09428 1581 aa24.13■■□□□ 1.45
HERC2-207ENST00000564734 EHMT2Q96KQ7 1210 aa24.12■■□□□ 1.45
HERC2-207ENST00000564734 PEG3Q9GZU2 1588 aa24.08■■□□□ 1.45
HERC2-207ENST00000564734 ZEB1P37275 1124 aaPredicted RBP23.97■■□□□ 1.43
HERC2-207ENST00000564734 SOGA1O94964 1423 aa23.91■■□□□ 1.42
HERC2-207ENST00000564734 EEA1Q15075 1411 aa23.87■■□□□ 1.41
HERC2-207ENST00000564734 ATAD2BQ9ULI0 1458 aa23.84■■□□□ 1.41
HERC2-207ENST00000564734 WRNQ14191 1432 aaPredicted RBP eCLIP23.83■■□□□ 1.41
HERC2-207ENST00000564734 TNIKQ9UKE5 1360 aa23.8■■□□□ 1.4
HERC2-207ENST00000564734 RUSC2Q8N2Y8 1516 aa23.8■■□□□ 1.4
HERC2-207ENST00000564734 CEP162Q5TB80 1403 aa23.77■■□□□ 1.4
HERC2-207ENST00000564734 CSRNP3Q8WYN3 585 aa23.77■■□□□ 1.4
HERC2-207ENST00000564734 DNAJC5BQ9UF47 199 aa23.76■■□□□ 1.39
HERC2-207ENST00000564734 CC2D2AQ9P2K1 1620 aa23.73■■□□□ 1.39
HERC2-207ENST00000564734 BAZ1BQ9UIG0 1483 aaKnown RBP23.72■■□□□ 1.39
HERC2-207ENST00000564734 SYNJ1O43426 1573 aa23.68■■□□□ 1.38
HERC2-207ENST00000564734 GOLGA3Q08378 1498 aa23.65■■□□□ 1.38
HERC2-207ENST00000564734 KIF21BO75037 1637 aa23.55■■□□□ 1.36
HERC2-207ENST00000564734 UBTFP17480 764 aaKnown RBP23.55■■□□□ 1.36
HERC2-207ENST00000564734 CEP164Q9UPV0 1460 aa23.53■■□□□ 1.36
HERC2-207ENST00000564734 NCAPD3P42695 1498 aa23.46■■□□□ 1.35
HERC2-207ENST00000564734 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.46■■□□□ 1.35
HERC2-207ENST00000564734 TOP2BQ02880 1626 aa23.45■■□□□ 1.34
HERC2-207ENST00000564734 HMGXB3Q12766 1538 aa23.43■■□□□ 1.34
HERC2-207ENST00000564734 CCER1Q8TC90 406 aaPredicted RBP23.39■■□□□ 1.34
HERC2-207ENST00000564734 BIVM-ERCC5R4GMW8 1640 aa23.39■■□□□ 1.33
HERC2-207ENST00000564734 TTBK1Q5TCY1 1321 aaPredicted RBP23.34■■□□□ 1.33
HERC2-207ENST00000564734 RAPGEF2Q9Y4G8 1499 aa23.34■■□□□ 1.33
HERC2-207ENST00000564734 CLIP1P30622 1438 aa23.34■■□□□ 1.33
HERC2-207ENST00000564734 VPS8Q8N3P4 1428 aa23.27■■□□□ 1.32
HERC2-207ENST00000564734 CUX1P39880 1505 aa23.21■■□□□ 1.31
HERC2-207ENST00000564734 CFTRP13569 1480 aa23.21■■□□□ 1.31
HERC2-207ENST00000564734 PRXQ9BXM0 1461 aa23.21■■□□□ 1.31
HERC2-207ENST00000564734 ERICH3Q5RHP9 1530 aa23.2■■□□□ 1.3
HERC2-207ENST00000564734 NESP48681 1621 aa23.06■■□□□ 1.28
HERC2-207ENST00000564734 KIF27Q86VH2 1401 aa23.05■■□□□ 1.28
HERC2-207ENST00000564734 ARAP1Q96P48 1450 aa23.03■■□□□ 1.28
HERC2-207ENST00000564734 PRDM2Q13029 1718 aa23.03■■□□□ 1.28
HERC2-207ENST00000564734 APLP2Q06481 763 aa22.99■■□□□ 1.27
HERC2-207ENST00000564734 CADPSQ9ULU8 1353 aa22.98■■□□□ 1.27
HERC2-207ENST00000564734 RANGAP1P46060 587 aaPredicted RBP22.97■■□□□ 1.27
HERC2-207ENST00000564734 HNRNPUL2Q1KMD3 747 aaKnown RBP22.96■■□□□ 1.27
HERC2-207ENST00000564734 DIEXFQ68CQ4 756 aaKnown RBP22.93■■□□□ 1.26
HERC2-207ENST00000564734 SCAF1Q9H7N4 1312 aaKnown RBP22.87■■□□□ 1.25
HERC2-207ENST00000564734 IGF1RP08069 1367 aa22.84■■□□□ 1.25
HERC2-207ENST00000564734 ARHGAP35Q9NRY4 1499 aa22.84■■□□□ 1.25
HERC2-207ENST00000564734 ZNF316A6NFI3 1004 aaPredicted RBP22.83■■□□□ 1.25
HERC2-207ENST00000564734 KANK4Q5T7N3 995 aaPredicted RBP22.82■■□□□ 1.24
HERC2-207ENST00000564734 CUX2O14529 1486 aa22.81■■□□□ 1.24
HERC2-207ENST00000564734 ERCC6Q03468 1493 aa22.78■■□□□ 1.24
HERC2-207ENST00000564734 FGD5Q6ZNL6 1462 aa22.78■■□□□ 1.24
HERC2-207ENST00000564734 FANCD2Q9BXW9 1451 aa22.77■■□□□ 1.24
HERC2-207ENST00000564734 RRBP1Q9P2E9 1410 aaKnown RBP22.76■■□□□ 1.23
HERC2-207ENST00000564734 PDS5BQ9NTI5 1447 aa22.74■■□□□ 1.23
HERC2-207ENST00000564734 LAMC3Q9Y6N6 1575 aa22.73■■□□□ 1.23
HERC2-207ENST00000564734 ACIN1Q9UKV3 1341 aaKnown RBP22.72■■□□□ 1.23
HERC2-207ENST00000564734 CARMIL1Q5VZK9 1371 aa22.7■■□□□ 1.22
HERC2-207ENST00000564734 CLSPNQ9HAW4 1339 aa22.68■■□□□ 1.22
HERC2-207ENST00000564734 DHX57Q6P158 1386 aaKnown RBP22.67■■□□□ 1.22
HERC2-207ENST00000564734 NEUROD1Q13562 356 aa22.66■■□□□ 1.22
HERC2-207ENST00000564734 MAP3K1Q13233 1512 aa22.64■■□□□ 1.22
HERC2-207ENST00000564734 DNMBPQ6XZF7 1577 aa22.61■■□□□ 1.21
HERC2-207ENST00000564734 KIF21AQ7Z4S6 1674 aa22.6■■□□□ 1.21
HERC2-207ENST00000564734 CCNB3Q8WWL7 1395 aa22.59■■□□□ 1.21
HERC2-207ENST00000564734 TIAM1Q13009 1591 aa22.58■■□□□ 1.2
HERC2-207ENST00000564734 ABCA10Q8WWZ4 1543 aa22.57■■□□□ 1.2
HERC2-207ENST00000564734 CENPBP07199 599 aaPredicted RBP22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms