RNA–Protein interactions for RNA: ENST00000563629.1

CYLD-205, Transcript of CYLD lysine 63 deubiquitinase, humanhuman

TSL 2

Gene CYLD, Length 2,568 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CYLD-205ENST00000563629 NISCHQ9Y2I1 1504 aa16.46■□□□□ 0.22
CYLD-205ENST00000563629 DCAF8L2P0C7V8 631 aa14.13□□□□□ -0.15
CYLD-205ENST00000563629 CCDC180Q9P1Z9 1646 aa14.13□□□□□ -0.15
CYLD-205ENST00000563629 SHROOM4Q9ULL8 1493 aa13.9□□□□□ -0.18
CYLD-205ENST00000563629 ABCC9O60706 1549 aa13.89□□□□□ -0.19
CYLD-205ENST00000563629 ZCCHC6Q5VYS8 1495 aaKnown RBP13.76□□□□□ -0.21
CYLD-205ENST00000563629 SUPT5HO00267 1087 aaKnown RBP13.57□□□□□ -0.24
CYLD-205ENST00000563629 DCAF1Q9Y4B6 1507 aa13.38□□□□□ -0.27
CYLD-205ENST00000563629 SCRIBQ14160 1630 aa13.33□□□□□ -0.27
CYLD-205ENST00000563629 NACADO15069 1562 aa13.27□□□□□ -0.28
CYLD-205ENST00000563629 PABPN1Q86U42 306 aaKnown RBP eCLIP13.25□□□□□ -0.29
CYLD-205ENST00000563629 RB1CC1Q8TDY2 1594 aa13.22□□□□□ -0.29
CYLD-205ENST00000563629 MYO15BQ96JP2 1530 aa13.2□□□□□ -0.3
CYLD-205ENST00000563629 CHIC1Q5VXU3 224 aa13.03□□□□□ -0.32
CYLD-205ENST00000563629 CECR2Q9BXF3 1484 aa12.99□□□□□ -0.33
CYLD-205ENST00000563629 UNC13AQ9UPW8 1703 aa12.97□□□□□ -0.33
CYLD-205ENST00000563629 BICRAQ9NZM4 1560 aa12.91□□□□□ -0.34
CYLD-205ENST00000563629 RSF1Q96T23 1441 aaPredicted RBP12.84□□□□□ -0.35
CYLD-205ENST00000563629 MROH2BQ7Z745 1585 aa12.82□□□□□ -0.36
CYLD-205ENST00000563629 LOC105371045A0A1W2PR82 267 aa12.75□□□□□ -0.37
CYLD-205ENST00000563629 PCGF6Q9BYE7 350 aa12.7□□□□□ -0.38
CYLD-205ENST00000563629 WIZO95785 1651 aa12.7□□□□□ -0.38
CYLD-205ENST00000563629 BAZ1AQ9NRL2 1556 aaPredicted RBP12.65□□□□□ -0.38
CYLD-205ENST00000563629 SMARCA4P51532 1647 aa12.63□□□□□ -0.39
CYLD-205ENST00000563629 EHMT2Q96KQ7 1210 aa12.61□□□□□ -0.39
CYLD-205ENST00000563629 FAM9AQ8IZU1 332 aaPredicted RBP12.6□□□□□ -0.39
CYLD-205ENST00000563629 TRIM41Q8WV44 630 aa12.56□□□□□ -0.4
CYLD-205ENST00000563629 HRCP23327 699 aa12.55□□□□□ -0.4
CYLD-205ENST00000563629 EIF4G1Q04637 1599 aaKnown RBP12.54□□□□□ -0.4
CYLD-205ENST00000563629 DNAJC5BQ9UF47 199 aa12.52□□□□□ -0.41
CYLD-205ENST00000563629 ATAD2BQ9ULI0 1458 aa12.51□□□□□ -0.41
CYLD-205ENST00000563629 PPARGC1BQ86YN6 1023 aaKnown RBP12.46□□□□□ -0.42
CYLD-205ENST00000563629 CCDC88BA6NC98 1476 aa12.44□□□□□ -0.42
CYLD-205ENST00000563629 BAZ1BQ9UIG0 1483 aaKnown RBP12.44□□□□□ -0.42
CYLD-205ENST00000563629 TOP2AP11388 1531 aaKnown RBP12.42□□□□□ -0.42
CYLD-205ENST00000563629 CC2D2AQ9P2K1 1620 aa12.4□□□□□ -0.42
CYLD-205ENST00000563629 SMARCA2P51531 1590 aa12.37□□□□□ -0.43
CYLD-205ENST00000563629 PEG3Q9GZU2 1588 aa12.35□□□□□ -0.43
CYLD-205ENST00000563629 NCAPD3P42695 1498 aa12.34□□□□□ -0.43
CYLD-205ENST00000563629 TRIM26Q12899 539 aaPredicted RBP12.34□□□□□ -0.43
CYLD-205ENST00000563629 ABCC8Q09428 1581 aa12.25□□□□□ -0.45
CYLD-205ENST00000563629 HMGXB3Q12766 1538 aa12.22□□□□□ -0.45
CYLD-205ENST00000563629 NESP48681 1621 aa12.18□□□□□ -0.46
CYLD-205ENST00000563629 TTBK1Q5TCY1 1321 aaPredicted RBP12.18□□□□□ -0.46
CYLD-205ENST00000563629 CADPSQ9ULU8 1353 aa12.12□□□□□ -0.47
CYLD-205ENST00000563629 CFTRP13569 1480 aa12.08□□□□□ -0.48
CYLD-205ENST00000563629 WRNQ14191 1432 aaPredicted RBP eCLIP12.08□□□□□ -0.48
CYLD-205ENST00000563629 SOGA1O94964 1423 aa12.08□□□□□ -0.48
CYLD-205ENST00000563629 RUSC2Q8N2Y8 1516 aa12.04□□□□□ -0.48
CYLD-205ENST00000563629 UBTFP17480 764 aaKnown RBP12.02□□□□□ -0.49
CYLD-205ENST00000563629 SYNJ1O43426 1573 aa12.02□□□□□ -0.49
CYLD-205ENST00000563629 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12□□□□□ -0.49
CYLD-205ENST00000563629 FANCD2Q9BXW9 1451 aa11.99□□□□□ -0.49
CYLD-205ENST00000563629 ZEB1P37275 1124 aaPredicted RBP11.98□□□□□ -0.49
CYLD-205ENST00000563629 CEP162Q5TB80 1403 aa11.98□□□□□ -0.49
CYLD-205ENST00000563629 CSRNP3Q8WYN3 585 aa11.96□□□□□ -0.5
CYLD-205ENST00000563629 RANGAP1P46060 587 aaPredicted RBP11.95□□□□□ -0.5
CYLD-205ENST00000563629 CUX1P39880 1505 aa11.95□□□□□ -0.5
CYLD-205ENST00000563629 CCER1Q8TC90 406 aaPredicted RBP11.93□□□□□ -0.5
CYLD-205ENST00000563629 PDS5BQ9NTI5 1447 aa11.89□□□□□ -0.51
CYLD-205ENST00000563629 TNIKQ9UKE5 1360 aa11.88□□□□□ -0.51
CYLD-205ENST00000563629 CEP164Q9UPV0 1460 aa11.88□□□□□ -0.51
CYLD-205ENST00000563629 RAD54L2Q9Y4B4 1467 aa11.88□□□□□ -0.51
CYLD-205ENST00000563629 GOLGA3Q08378 1498 aa11.86□□□□□ -0.51
CYLD-205ENST00000563629 LAMC3Q9Y6N6 1575 aa11.86□□□□□ -0.51
CYLD-205ENST00000563629 TOP2BQ02880 1626 aa11.86□□□□□ -0.51
CYLD-205ENST00000563629 FGD5Q6ZNL6 1462 aa11.85□□□□□ -0.51
CYLD-205ENST00000563629 EEA1Q15075 1411 aa11.85□□□□□ -0.51
CYLD-205ENST00000563629 URB2Q14146 1524 aaKnown RBP11.85□□□□□ -0.51
CYLD-205ENST00000563629 ERCC6Q03468 1493 aa11.84□□□□□ -0.51
CYLD-205ENST00000563629 KIF21AQ7Z4S6 1674 aa11.84□□□□□ -0.51
CYLD-205ENST00000563629 TOPBP1Q92547 1522 aa11.82□□□□□ -0.52
CYLD-205ENST00000563629 TDRD9Q8NDG6 1382 aaKnown RBP11.82□□□□□ -0.52
CYLD-205ENST00000563629 CUX2O14529 1486 aa11.81□□□□□ -0.52
CYLD-205ENST00000563629 POLA1P09884 1462 aaPredicted RBP11.8□□□□□ -0.52
CYLD-205ENST00000563629 BIVM-ERCC5R4GMW8 1640 aa11.78□□□□□ -0.52
CYLD-205ENST00000563629 PRDM2Q13029 1718 aa11.78□□□□□ -0.52
CYLD-205ENST00000563629 RAPGEF2Q9Y4G8 1499 aa11.77□□□□□ -0.53
CYLD-205ENST00000563629 CLIP1P30622 1438 aa11.76□□□□□ -0.53
CYLD-205ENST00000563629 HNRNPUL2Q1KMD3 747 aaKnown RBP11.75□□□□□ -0.53
CYLD-205ENST00000563629 KIF21BO75037 1637 aa11.75□□□□□ -0.53
CYLD-205ENST00000563629 DNMBPQ6XZF7 1577 aa11.74□□□□□ -0.53
CYLD-205ENST00000563629 KIF27Q86VH2 1401 aa11.74□□□□□ -0.53
CYLD-205ENST00000563629 IGF1RP08069 1367 aa11.73□□□□□ -0.53
CYLD-205ENST00000563629 AQRO60306 1485 aaKnown RBP eCLIP11.72□□□□□ -0.53
CYLD-205ENST00000563629 MRC2Q9UBG0 1479 aa11.71□□□□□ -0.53
CYLD-205ENST00000563629 APLP2Q06481 763 aa11.71□□□□□ -0.54
CYLD-205ENST00000563629 ZNF608Q9ULD9 1512 aaPredicted RBP11.69□□□□□ -0.54
CYLD-205ENST00000563629 FBLN2P98095 1184 aa11.67□□□□□ -0.54
CYLD-205ENST00000563629 VPS8Q8N3P4 1428 aa11.66□□□□□ -0.54
CYLD-205ENST00000563629 CARMIL1Q5VZK9 1371 aa11.66□□□□□ -0.54
CYLD-205ENST00000563629 P3H3Q8IVL6 736 aa11.66□□□□□ -0.54
CYLD-205ENST00000563629 ABCA10Q8WWZ4 1543 aa11.64□□□□□ -0.55
CYLD-205ENST00000563629 PRXQ9BXM0 1461 aa11.62□□□□□ -0.55
CYLD-205ENST00000563629 DIEXFQ68CQ4 756 aaKnown RBP11.62□□□□□ -0.55
CYLD-205ENST00000563629 GAPVD1Q14C86 1478 aa11.62□□□□□ -0.55
CYLD-205ENST00000563629 WDR62O43379 1518 aa11.6□□□□□ -0.55
CYLD-205ENST00000563629 THOC2Q8NI27 1593 aaKnown RBP11.6□□□□□ -0.55
CYLD-205ENST00000563629 SCAF1Q9H7N4 1312 aaKnown RBP11.59□□□□□ -0.55
CYLD-205ENST00000563629 TARBP1Q13395 1621 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms