RNA–Protein interactions for RNA: ENST00000562729.5

CHRFAM7A-204, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

TSL 4

Gene CHRFAM7A, Length 573 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-204ENST00000562729 AEBP2Q6ZN18 517 aaPredicted RBP26.34■■□□□ 1.81
CHRFAM7A-204ENST00000562729 CHIC1Q5VXU3 224 aa24.72■■□□□ 1.55
CHRFAM7A-204ENST00000562729 NISCHQ9Y2I1 1504 aa22.62■■□□□ 1.21
CHRFAM7A-204ENST00000562729 SENP3Q9H4L4 574 aaPredicted RBP22.45■■□□□ 1.18
CHRFAM7A-204ENST00000562729 PHF23Q9BUL5 403 aaPredicted RBP22.15■■□□□ 1.14
CHRFAM7A-204ENST00000562729 FOXD1Q16676 465 aa21■□□□□ 0.95
CHRFAM7A-204ENST00000562729 CCDC180Q9P1Z9 1646 aa20.23■□□□□ 0.83
CHRFAM7A-204ENST00000562729 ABCC9O60706 1549 aa20.02■□□□□ 0.8
CHRFAM7A-204ENST00000562729 POTEDQ86YR6 584 aa19.74■□□□□ 0.75
CHRFAM7A-204ENST00000562729 MSH5O43196 834 aa19.72■□□□□ 0.75
CHRFAM7A-204ENST00000562729 PLPPR3Q6T4P5 718 aa19.6■□□□□ 0.73
CHRFAM7A-204ENST00000562729 PIAS4Q8N2W9 510 aaPredicted RBP19.52■□□□□ 0.72
CHRFAM7A-204ENST00000562729 PPP6R1Q9UPN7 881 aa19.45■□□□□ 0.7
CHRFAM7A-204ENST00000562729 ADRA2BP18089 450 aa19.35■□□□□ 0.69
CHRFAM7A-204ENST00000562729 DCAF8L2P0C7V8 631 aa19.18■□□□□ 0.66
CHRFAM7A-204ENST00000562729 RB1CC1Q8TDY2 1594 aa19.18■□□□□ 0.66
CHRFAM7A-204ENST00000562729 NACADO15069 1562 aa19.06■□□□□ 0.64
CHRFAM7A-204ENST00000562729 MYO15BQ96JP2 1530 aa18.82■□□□□ 0.6
CHRFAM7A-204ENST00000562729 ZCCHC6Q5VYS8 1495 aaKnown RBP18.78■□□□□ 0.6
CHRFAM7A-204ENST00000562729 PABPN1Q86U42 306 aaKnown RBP eCLIP18.69■□□□□ 0.58
CHRFAM7A-204ENST00000562729 UNC13AQ9UPW8 1703 aa18.69■□□□□ 0.58
CHRFAM7A-204ENST00000562729 DCAF1Q9Y4B6 1507 aa18.67■□□□□ 0.58
CHRFAM7A-204ENST00000562729 BICRAQ9NZM4 1560 aa18.5■□□□□ 0.55
CHRFAM7A-204ENST00000562729 SCRIBQ14160 1630 aa18.49■□□□□ 0.55
CHRFAM7A-204ENST00000562729 DNAJC5BQ9UF47 199 aa18.46■□□□□ 0.55
CHRFAM7A-204ENST00000562729 SHROOM4Q9ULL8 1493 aa18.33■□□□□ 0.52
CHRFAM7A-204ENST00000562729 EIF4G1Q04637 1599 aaKnown RBP18.09■□□□□ 0.49
CHRFAM7A-204ENST00000562729 CC2D2AQ9P2K1 1620 aa18.08■□□□□ 0.48
CHRFAM7A-204ENST00000562729 CECR2Q9BXF3 1484 aa18.01■□□□□ 0.47
CHRFAM7A-204ENST00000562729 MAPK8IP2Q13387 824 aaPredicted RBP17.86■□□□□ 0.45
CHRFAM7A-204ENST00000562729 DMRT2Q9Y5R5 561 aa17.78■□□□□ 0.44
CHRFAM7A-204ENST00000562729 SCAF1Q9H7N4 1312 aaKnown RBP17.65■□□□□ 0.42
CHRFAM7A-204ENST00000562729 SMARCA4P51532 1647 aa17.62■□□□□ 0.41
CHRFAM7A-204ENST00000562729 BAZ1AQ9NRL2 1556 aaPredicted RBP17.59■□□□□ 0.41
CHRFAM7A-204ENST00000562729 SMARCA2P51531 1590 aa17.57■□□□□ 0.4
CHRFAM7A-204ENST00000562729 NCAPD3P42695 1498 aa17.56■□□□□ 0.4
CHRFAM7A-204ENST00000562729 ATAD2BQ9ULI0 1458 aa17.55■□□□□ 0.4
CHRFAM7A-204ENST00000562729 HMGXB3Q12766 1538 aa17.47■□□□□ 0.39
CHRFAM7A-204ENST00000562729 BAZ1BQ9UIG0 1483 aaKnown RBP17.47■□□□□ 0.39
CHRFAM7A-204ENST00000562729 MROH2BQ7Z745 1585 aa17.43■□□□□ 0.38
CHRFAM7A-204ENST00000562729 PEG3Q9GZU2 1588 aa17.39■□□□□ 0.37
CHRFAM7A-204ENST00000562729 ERCC6Q03468 1493 aa17.35■□□□□ 0.37
CHRFAM7A-204ENST00000562729 WIZO95785 1651 aa17.27■□□□□ 0.36
CHRFAM7A-204ENST00000562729 NESP48681 1621 aa17.23■□□□□ 0.35
CHRFAM7A-204ENST00000562729 LAMC3Q9Y6N6 1575 aa17.18■□□□□ 0.34
CHRFAM7A-204ENST00000562729 PPP4R3CPQ6ZMV5 832 aa17.17■□□□□ 0.34
CHRFAM7A-204ENST00000562729 RSF1Q96T23 1441 aaPredicted RBP17.15■□□□□ 0.34
CHRFAM7A-204ENST00000562729 CUX2O14529 1486 aa17.14■□□□□ 0.33
CHRFAM7A-204ENST00000562729 PDS5BQ9NTI5 1447 aa17.11■□□□□ 0.33
CHRFAM7A-204ENST00000562729 CACNB1Q02641 598 aaPredicted RBP17.08■□□□□ 0.32
CHRFAM7A-204ENST00000562729 CADPSQ9ULU8 1353 aa17.07■□□□□ 0.32
CHRFAM7A-204ENST00000562729 TOP2AP11388 1531 aaKnown RBP17.06■□□□□ 0.32
CHRFAM7A-204ENST00000562729 KIF21AQ7Z4S6 1674 aa17.05■□□□□ 0.32
CHRFAM7A-204ENST00000562729 DCAF8L1A6NGE4 600 aa17.03■□□□□ 0.32
CHRFAM7A-204ENST00000562729 HOXD11P31277 338 aaPredicted RBP17.03■□□□□ 0.32
CHRFAM7A-204ENST00000562729 THOC2Q8NI27 1593 aaKnown RBP16.99■□□□□ 0.31
CHRFAM7A-204ENST00000562729 CEP164Q9UPV0 1460 aa16.93■□□□□ 0.3
CHRFAM7A-204ENST00000562729 MRC2Q9UBG0 1479 aa16.92■□□□□ 0.3
CHRFAM7A-204ENST00000562729 CFTRP13569 1480 aa16.9■□□□□ 0.3
CHRFAM7A-204ENST00000562729 FANCD2Q9BXW9 1451 aa16.9■□□□□ 0.3
CHRFAM7A-204ENST00000562729 CNKSR2Q8WXI2 1034 aa16.89■□□□□ 0.29
CHRFAM7A-204ENST00000562729 CCDC88BA6NC98 1476 aa16.86■□□□□ 0.29
CHRFAM7A-204ENST00000562729 WDR62O43379 1518 aa16.83■□□□□ 0.28
CHRFAM7A-204ENST00000562729 DNAJC5Q9H3Z4 198 aa16.83■□□□□ 0.28
CHRFAM7A-204ENST00000562729 RNF39Q9H2S5 420 aa16.82■□□□□ 0.28
CHRFAM7A-204ENST00000562729 RNF216Q9NWF9 866 aaPredicted RBP16.82■□□□□ 0.28
CHRFAM7A-204ENST00000562729 PRDM2Q13029 1718 aa16.81■□□□□ 0.28
CHRFAM7A-204ENST00000562729 SUPT5HO00267 1087 aaKnown RBP16.72■□□□□ 0.27
CHRFAM7A-204ENST00000562729 URB2Q14146 1524 aaKnown RBP16.7■□□□□ 0.26
CHRFAM7A-204ENST00000562729 ABCC8Q09428 1581 aa16.61■□□□□ 0.25
CHRFAM7A-204ENST00000562729 TOPBP1Q92547 1522 aa16.58■□□□□ 0.24
CHRFAM7A-204ENST00000562729 DNMBPQ6XZF7 1577 aa16.56■□□□□ 0.24
CHRFAM7A-204ENST00000562729 IFT140Q96RY7 1462 aa16.55■□□□□ 0.24
CHRFAM7A-204ENST00000562729 C1QBPQ07021 282 aaKnown RBP16.54■□□□□ 0.24
CHRFAM7A-204ENST00000562729 ZNF608Q9ULD9 1512 aaPredicted RBP16.46■□□□□ 0.23
CHRFAM7A-204ENST00000562729 OSCARQ8IYS5 282 aa16.45■□□□□ 0.22
CHRFAM7A-204ENST00000562729 EIF4G3O43432 1585 aaKnown RBP16.43■□□□□ 0.22
CHRFAM7A-204ENST00000562729 POLA1P09884 1462 aaPredicted RBP16.42■□□□□ 0.22
CHRFAM7A-204ENST00000562729 SOGA1O94964 1423 aa16.4■□□□□ 0.22
CHRFAM7A-204ENST00000562729 TARBP1Q13395 1621 aaKnown RBP16.39■□□□□ 0.21
CHRFAM7A-204ENST00000562729 FGD5Q6ZNL6 1462 aa16.38■□□□□ 0.21
CHRFAM7A-204ENST00000562729 NCBP3Q53F19 620 aaKnown RBP16.38■□□□□ 0.21
CHRFAM7A-204ENST00000562729 AQRO60306 1485 aaKnown RBP eCLIP16.37■□□□□ 0.21
CHRFAM7A-204ENST00000562729 RAD54L2Q9Y4B4 1467 aa16.37■□□□□ 0.21
CHRFAM7A-204ENST00000562729 CUX1P39880 1505 aa16.37■□□□□ 0.21
CHRFAM7A-204ENST00000562729 FBLN2P98095 1184 aa16.34■□□□□ 0.21
CHRFAM7A-204ENST00000562729 TRIM41Q8WV44 630 aa16.33■□□□□ 0.2
CHRFAM7A-204ENST00000562729 TDRD9Q8NDG6 1382 aaKnown RBP16.32■□□□□ 0.2
CHRFAM7A-204ENST00000562729 WDR97A6NE52 1622 aa16.28■□□□□ 0.2
CHRFAM7A-204ENST00000562729 CHD1O14646 1710 aa16.27■□□□□ 0.19
CHRFAM7A-204ENST00000562729 WRNQ14191 1432 aaPredicted RBP eCLIP16.24■□□□□ 0.19
CHRFAM7A-204ENST00000562729 SNAPC4Q5SXM2 1469 aa16.23■□□□□ 0.19
CHRFAM7A-204ENST00000562729 GRIN2BQ13224 1484 aa16.22■□□□□ 0.19
CHRFAM7A-204ENST00000562729 CHMP7Q8WUX9 453 aaPredicted RBP16.22■□□□□ 0.19
CHRFAM7A-204ENST00000562729 GAPVD1Q14C86 1478 aa16.2■□□□□ 0.18
CHRFAM7A-204ENST00000562729 TOP2BQ02880 1626 aa16.19■□□□□ 0.18
CHRFAM7A-204ENST00000562729 PBRM1Q86U86 1689 aa16.19■□□□□ 0.18
CHRFAM7A-204ENST00000562729 MAGI1Q96QZ7 1491 aaPredicted RBP16.19■□□□□ 0.18
CHRFAM7A-204ENST00000562729 NPM3O75607 178 aaKnown RBP16.19■□□□□ 0.18
CHRFAM7A-204ENST00000562729 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms