RNA–Protein interactions for RNA: ENST00000561367.1

KNSTRN-215, Transcript of kinetochore localized astrin (SPAG5) binding protein, humanhuman

TSL 2

Gene KNSTRN, Length 630 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KNSTRN-215ENST00000561367 AEBP2Q6ZN18 517 aaPredicted RBP28.56■■■□□ 2.16
KNSTRN-215ENST00000561367 CHIC1Q5VXU3 224 aa27.3■■□□□ 1.96
KNSTRN-215ENST00000561367 SENP3Q9H4L4 574 aaPredicted RBP24.14■■□□□ 1.45
KNSTRN-215ENST00000561367 PHF23Q9BUL5 403 aaPredicted RBP24.06■■□□□ 1.44
KNSTRN-215ENST00000561367 NISCHQ9Y2I1 1504 aa23.46■■□□□ 1.35
KNSTRN-215ENST00000561367 FOXD1Q16676 465 aa22.58■■□□□ 1.21
KNSTRN-215ENST00000561367 PLPPR3Q6T4P5 718 aa21.88■■□□□ 1.09
KNSTRN-215ENST00000561367 PPP6R1Q9UPN7 881 aa21.4■■□□□ 1.02
KNSTRN-215ENST00000561367 ADRA2BP18089 450 aa21.31■■□□□ 1
KNSTRN-215ENST00000561367 PIAS4Q8N2W9 510 aaPredicted RBP21.11■□□□□ 0.97
KNSTRN-215ENST00000561367 MSH5O43196 834 aa20.87■□□□□ 0.93
KNSTRN-215ENST00000561367 CCDC180Q9P1Z9 1646 aa20.77■□□□□ 0.92
KNSTRN-215ENST00000561367 POTEDQ86YR6 584 aa20■□□□□ 0.79
KNSTRN-215ENST00000561367 ABCC9O60706 1549 aa19.92■□□□□ 0.78
KNSTRN-215ENST00000561367 ZCCHC6Q5VYS8 1495 aaKnown RBP19.6■□□□□ 0.73
KNSTRN-215ENST00000561367 MYO15BQ96JP2 1530 aa19.51■□□□□ 0.71
KNSTRN-215ENST00000561367 DCAF1Q9Y4B6 1507 aa19.51■□□□□ 0.71
KNSTRN-215ENST00000561367 MAPK8IP2Q13387 824 aaPredicted RBP19.51■□□□□ 0.71
KNSTRN-215ENST00000561367 NACADO15069 1562 aa19.48■□□□□ 0.71
KNSTRN-215ENST00000561367 RB1CC1Q8TDY2 1594 aa19.4■□□□□ 0.7
KNSTRN-215ENST00000561367 DCAF8L2P0C7V8 631 aa19.38■□□□□ 0.69
KNSTRN-215ENST00000561367 SCAF1Q9H7N4 1312 aaKnown RBP19.28■□□□□ 0.68
KNSTRN-215ENST00000561367 PPP4R3CPQ6ZMV5 832 aa19.27■□□□□ 0.68
KNSTRN-215ENST00000561367 DMRT2Q9Y5R5 561 aa19.24■□□□□ 0.67
KNSTRN-215ENST00000561367 SCRIBQ14160 1630 aa18.85■□□□□ 0.61
KNSTRN-215ENST00000561367 UNC13AQ9UPW8 1703 aa18.83■□□□□ 0.61
KNSTRN-215ENST00000561367 CNKSR2Q8WXI2 1034 aa18.8■□□□□ 0.6
KNSTRN-215ENST00000561367 SHROOM4Q9ULL8 1493 aa18.75■□□□□ 0.59
KNSTRN-215ENST00000561367 BICRAQ9NZM4 1560 aa18.72■□□□□ 0.59
KNSTRN-215ENST00000561367 HOXD11P31277 338 aaPredicted RBP18.65■□□□□ 0.58
KNSTRN-215ENST00000561367 PABPN1Q86U42 306 aaKnown RBP eCLIP18.63■□□□□ 0.57
KNSTRN-215ENST00000561367 RNF216Q9NWF9 866 aaPredicted RBP18.56■□□□□ 0.56
KNSTRN-215ENST00000561367 NCBP3Q53F19 620 aaKnown RBP18.49■□□□□ 0.55
KNSTRN-215ENST00000561367 DCAF8L1A6NGE4 600 aa18.38■□□□□ 0.53
KNSTRN-215ENST00000561367 NPM3O75607 178 aaKnown RBP18.38■□□□□ 0.53
KNSTRN-215ENST00000561367 KCNA4P22459 653 aa18.33■□□□□ 0.52
KNSTRN-215ENST00000561367 EIF4G1Q04637 1599 aaKnown RBP18.24■□□□□ 0.51
KNSTRN-215ENST00000561367 BAZ1AQ9NRL2 1556 aaPredicted RBP18.2■□□□□ 0.5
KNSTRN-215ENST00000561367 CECR2Q9BXF3 1484 aa18.16■□□□□ 0.5
KNSTRN-215ENST00000561367 SMARCA4P51532 1647 aa18.12■□□□□ 0.49
KNSTRN-215ENST00000561367 CC2D2AQ9P2K1 1620 aa18.07■□□□□ 0.48
KNSTRN-215ENST00000561367 MROH2BQ7Z745 1585 aa18.02■□□□□ 0.48
KNSTRN-215ENST00000561367 SMARCA2P51531 1590 aa18.01■□□□□ 0.47
KNSTRN-215ENST00000561367 PEG3Q9GZU2 1588 aa18■□□□□ 0.47
KNSTRN-215ENST00000561367 DNAJC5BQ9UF47 199 aa17.97■□□□□ 0.47
KNSTRN-215ENST00000561367 ATAD2BQ9ULI0 1458 aa17.96■□□□□ 0.47
KNSTRN-215ENST00000561367 RSF1Q96T23 1441 aaPredicted RBP17.96■□□□□ 0.47
KNSTRN-215ENST00000561367 NCAPD3P42695 1498 aa17.95■□□□□ 0.46
KNSTRN-215ENST00000561367 RNF39Q9H2S5 420 aa17.93■□□□□ 0.46
KNSTRN-215ENST00000561367 HMGXB3Q12766 1538 aa17.9■□□□□ 0.46
KNSTRN-215ENST00000561367 BAZ1BQ9UIG0 1483 aaKnown RBP17.84■□□□□ 0.45
KNSTRN-215ENST00000561367 WIZO95785 1651 aa17.81■□□□□ 0.44
KNSTRN-215ENST00000561367 CACNB1Q02641 598 aaPredicted RBP17.75■□□□□ 0.43
KNSTRN-215ENST00000561367 TOP2AP11388 1531 aaKnown RBP17.73■□□□□ 0.43
KNSTRN-215ENST00000561367 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.7■□□□□ 0.429e-7■□□□□ 8.7
KNSTRN-215ENST00000561367 SUPT5HO00267 1087 aaKnown RBP17.64■□□□□ 0.41
KNSTRN-215ENST00000561367 C1QBPQ07021 282 aaKnown RBP17.6■□□□□ 0.41
KNSTRN-215ENST00000561367 SLC4A2P04920 1241 aa17.53■□□□□ 0.4
KNSTRN-215ENST00000561367 CCDC88BA6NC98 1476 aa17.49■□□□□ 0.39
KNSTRN-215ENST00000561367 U3KPZ7 1027 aaPredicted RBP17.48■□□□□ 0.39
KNSTRN-215ENST00000561367 LAMC3Q9Y6N6 1575 aa17.44■□□□□ 0.38
KNSTRN-215ENST00000561367 CADPSQ9ULU8 1353 aa17.42■□□□□ 0.38
KNSTRN-215ENST00000561367 CFTRP13569 1480 aa17.39■□□□□ 0.37
KNSTRN-215ENST00000561367 PDS5BQ9NTI5 1447 aa17.32■□□□□ 0.36
KNSTRN-215ENST00000561367 NESP48681 1621 aa17.3■□□□□ 0.36
KNSTRN-215ENST00000561367 SLC4A1APQ9BWU0 796 aaKnown RBP17.28■□□□□ 0.36
KNSTRN-215ENST00000561367 PRDM2Q13029 1718 aa17.24■□□□□ 0.35
KNSTRN-215ENST00000561367 ERCC6Q03468 1493 aa17.21■□□□□ 0.35
KNSTRN-215ENST00000561367 FANCD2Q9BXW9 1451 aa17.2■□□□□ 0.34
KNSTRN-215ENST00000561367 CEP164Q9UPV0 1460 aa17.18■□□□□ 0.34
KNSTRN-215ENST00000561367 SPINK5Q9NQ38 1064 aaPredicted RBP17.15■□□□□ 0.34
KNSTRN-215ENST00000561367 KIF21AQ7Z4S6 1674 aa17.12■□□□□ 0.33
KNSTRN-215ENST00000561367 MRC2Q9UBG0 1479 aa17.08■□□□□ 0.32
KNSTRN-215ENST00000561367 ABCC8Q09428 1581 aa17.07■□□□□ 0.32
KNSTRN-215ENST00000561367 THOC2Q8NI27 1593 aaKnown RBP17.04■□□□□ 0.32
KNSTRN-215ENST00000561367 WDR62O43379 1518 aa17.02■□□□□ 0.32
KNSTRN-215ENST00000561367 CAPN15O75808 1086 aa17■□□□□ 0.31
KNSTRN-215ENST00000561367 CUX2O14529 1486 aa16.99■□□□□ 0.31
KNSTRN-215ENST00000561367 DNMBPQ6XZF7 1577 aa16.98■□□□□ 0.31
KNSTRN-215ENST00000561367 URB2Q14146 1524 aaKnown RBP16.97■□□□□ 0.31
KNSTRN-215ENST00000561367 TOPBP1Q92547 1522 aa16.95■□□□□ 0.3
KNSTRN-215ENST00000561367 WRNQ14191 1432 aaPredicted RBP eCLIP16.95■□□□□ 0.3
KNSTRN-215ENST00000561367 ZBTB22O15209 634 aa16.93■□□□□ 0.3
KNSTRN-215ENST00000561367 MYCNP04198 464 aaPredicted RBP16.92■□□□□ 0.3
KNSTRN-215ENST00000561367 FOXD4L1Q9NU39 408 aa16.92■□□□□ 0.3
KNSTRN-215ENST00000561367 DSG3P32926 999 aa16.9■□□□□ 0.3
KNSTRN-215ENST00000561367 CUX1P39880 1505 aa16.9■□□□□ 0.3
KNSTRN-215ENST00000561367 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.88■□□□□ 0.29
KNSTRN-215ENST00000561367 HNRNPUL2Q1KMD3 747 aaKnown RBP16.88■□□□□ 0.29
KNSTRN-215ENST00000561367 TOP2BQ02880 1626 aa16.88■□□□□ 0.29
KNSTRN-215ENST00000561367 BIVM-ERCC5R4GMW8 1640 aa16.87■□□□□ 0.29
KNSTRN-215ENST00000561367 SAMD1Q6SPF0 538 aaPredicted RBP16.85■□□□□ 0.29
KNSTRN-215ENST00000561367 POLA1P09884 1462 aaPredicted RBP16.83■□□□□ 0.28
KNSTRN-215ENST00000561367 SYNJ1O43426 1573 aa16.82■□□□□ 0.28
KNSTRN-215ENST00000561367 IFT140Q96RY7 1462 aa16.82■□□□□ 0.28
KNSTRN-215ENST00000561367 TRHP20396 242 aaPredicted RBP16.82■□□□□ 0.28
KNSTRN-215ENST00000561367 FGD5Q6ZNL6 1462 aa16.81■□□□□ 0.28
KNSTRN-215ENST00000561367 APLP2Q06481 763 aa16.78■□□□□ 0.28
KNSTRN-215ENST00000561367 SOGA1O94964 1423 aa16.78■□□□□ 0.28
KNSTRN-215ENST00000561367 WDR97A6NE52 1622 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms