RNA–Protein interactions for RNA: ENST00000561304.5

ZEB1-223, Transcript of zinc finger E-box binding homeobox 1, humanhuman

TSL 1 (best)

Gene ZEB1, Length 1,383 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZEB1-223ENST00000561304 AEBP2Q6ZN18 517 aaPredicted RBP21.41■■□□□ 1.02
ZEB1-223ENST00000561304 CHIC1Q5VXU3 224 aa20.79■□□□□ 0.92
ZEB1-223ENST00000561304 NISCHQ9Y2I1 1504 aa18.56■□□□□ 0.56
ZEB1-223ENST00000561304 SENP3Q9H4L4 574 aaPredicted RBP18.29■□□□□ 0.52
ZEB1-223ENST00000561304 PHF23Q9BUL5 403 aaPredicted RBP18.21■□□□□ 0.51
ZEB1-223ENST00000561304 POTEDQ86YR6 584 aa17.48■□□□□ 0.39
ZEB1-223ENST00000561304 FOXD1Q16676 465 aa17.15■□□□□ 0.34
ZEB1-223ENST00000561304 PLPPR3Q6T4P5 718 aa16.83■□□□□ 0.28
ZEB1-223ENST00000561304 CCDC180Q9P1Z9 1646 aa16.67■□□□□ 0.26
ZEB1-223ENST00000561304 ABCC9O60706 1549 aa16.44■□□□□ 0.22
ZEB1-223ENST00000561304 MSH5O43196 834 aa16.31■□□□□ 0.2
ZEB1-223ENST00000561304 PPP6R1Q9UPN7 881 aa16.12■□□□□ 0.17
ZEB1-223ENST00000561304 ADRA2BP18089 450 aa16.09■□□□□ 0.17
ZEB1-223ENST00000561304 PIAS4Q8N2W9 510 aaPredicted RBP15.93■□□□□ 0.14
ZEB1-223ENST00000561304 RB1CC1Q8TDY2 1594 aa15.72■□□□□ 0.11
ZEB1-223ENST00000561304 NACADO15069 1562 aa15.64■□□□□ 0.09
ZEB1-223ENST00000561304 UNC13AQ9UPW8 1703 aa15.56■□□□□ 0.08
ZEB1-223ENST00000561304 DCAF8L2P0C7V8 631 aa15.47■□□□□ 0.07
ZEB1-223ENST00000561304 MYO15BQ96JP2 1530 aa15.45■□□□□ 0.06
ZEB1-223ENST00000561304 ZCCHC6Q5VYS8 1495 aaKnown RBP15.44■□□□□ 0.06
ZEB1-223ENST00000561304 BICRAQ9NZM4 1560 aa15.33■□□□□ 0.04
ZEB1-223ENST00000561304 DCAF1Q9Y4B6 1507 aa15.33■□□□□ 0.04
ZEB1-223ENST00000561304 PABPN1Q86U42 306 aaKnown RBP eCLIP15.27■□□□□ 0.04
ZEB1-223ENST00000561304 DNAJC5BQ9UF47 199 aa15.26■□□□□ 0.03
ZEB1-223ENST00000561304 SCRIBQ14160 1630 aa15.19■□□□□ 0.02
ZEB1-223ENST00000561304 SHROOM4Q9ULL8 1493 aa15.03■□□□□ -0
ZEB1-223ENST00000561304 CC2D2AQ9P2K1 1620 aa14.91□□□□□ -0.02
ZEB1-223ENST00000561304 EIF4G1Q04637 1599 aaKnown RBP14.9□□□□□ -0.02
ZEB1-223ENST00000561304 SCAF1Q9H7N4 1312 aaKnown RBP14.84□□□□□ -0.03
ZEB1-223ENST00000561304 CECR2Q9BXF3 1484 aa14.77□□□□□ -0.04
ZEB1-223ENST00000561304 PPP4R3CPQ6ZMV5 832 aa14.76□□□□□ -0.05
ZEB1-223ENST00000561304 MAPK8IP2Q13387 824 aaPredicted RBP14.63□□□□□ -0.07
ZEB1-223ENST00000561304 DMRT2Q9Y5R5 561 aa14.55□□□□□ -0.08
ZEB1-223ENST00000561304 CACNB1Q02641 598 aaPredicted RBP14.53□□□□□ -0.08
ZEB1-223ENST00000561304 SMARCA4P51532 1647 aa14.5□□□□□ -0.09
ZEB1-223ENST00000561304 CNKSR2Q8WXI2 1034 aa14.43□□□□□ -0.1
ZEB1-223ENST00000561304 ATAD2BQ9ULI0 1458 aa14.4□□□□□ -0.1
ZEB1-223ENST00000561304 NCAPD3P42695 1498 aa14.4□□□□□ -0.1
ZEB1-223ENST00000561304 BAZ1AQ9NRL2 1556 aaPredicted RBP14.39□□□□□ -0.11
ZEB1-223ENST00000561304 NCBP3Q53F19 620 aaKnown RBP14.38□□□□□ -0.11
ZEB1-223ENST00000561304 SMARCA2P51531 1590 aa14.37□□□□□ -0.11
ZEB1-223ENST00000561304 HMGXB3Q12766 1538 aa14.37□□□□□ -0.11
ZEB1-223ENST00000561304 PEG3Q9GZU2 1588 aa14.34□□□□□ -0.11
ZEB1-223ENST00000561304 MROH2BQ7Z745 1585 aa14.33□□□□□ -0.12
ZEB1-223ENST00000561304 BAZ1BQ9UIG0 1483 aaKnown RBP14.28□□□□□ -0.12
ZEB1-223ENST00000561304 WIZO95785 1651 aa14.22□□□□□ -0.13
ZEB1-223ENST00000561304 NESP48681 1621 aa14.2□□□□□ -0.14
ZEB1-223ENST00000561304 RNF216Q9NWF9 866 aaPredicted RBP14.2□□□□□ -0.14
ZEB1-223ENST00000561304 HOXD11P31277 338 aaPredicted RBP14.19□□□□□ -0.14
ZEB1-223ENST00000561304 KCNA4P22459 653 aa14.18□□□□□ -0.14
ZEB1-223ENST00000561304 ERCC6Q03468 1493 aa14.14□□□□□ -0.15
ZEB1-223ENST00000561304 KIF21AQ7Z4S6 1674 aa14.12□□□□□ -0.15
ZEB1-223ENST00000561304 NPM3O75607 178 aaKnown RBP14.11□□□□□ -0.15
ZEB1-223ENST00000561304 LAMC3Q9Y6N6 1575 aa14.1□□□□□ -0.15
ZEB1-223ENST00000561304 THOC2Q8NI27 1593 aaKnown RBP14.09□□□□□ -0.15
ZEB1-223ENST00000561304 CUX2O14529 1486 aa14.08□□□□□ -0.16
ZEB1-223ENST00000561304 RSF1Q96T23 1441 aaPredicted RBP14.04□□□□□ -0.16
ZEB1-223ENST00000561304 TOP2AP11388 1531 aaKnown RBP13.99□□□□□ -0.17
ZEB1-223ENST00000561304 CADPSQ9ULU8 1353 aa13.95□□□□□ -0.18
ZEB1-223ENST00000561304 PDS5BQ9NTI5 1447 aa13.93□□□□□ -0.18
ZEB1-223ENST00000561304 PRDM2Q13029 1718 aa13.92□□□□□ -0.18
ZEB1-223ENST00000561304 RNF39Q9H2S5 420 aa13.88□□□□□ -0.19
ZEB1-223ENST00000561304 DCAF8L1A6NGE4 600 aa13.87□□□□□ -0.19
ZEB1-223ENST00000561304 WDR62O43379 1518 aa13.87□□□□□ -0.19
ZEB1-223ENST00000561304 MRC2Q9UBG0 1479 aa13.87□□□□□ -0.19
ZEB1-223ENST00000561304 CFTRP13569 1480 aa13.86□□□□□ -0.19
ZEB1-223ENST00000561304 DNAJC5Q9H3Z4 198 aa13.83□□□□□ -0.19
ZEB1-223ENST00000561304 FANCD2Q9BXW9 1451 aa13.83□□□□□ -0.19
ZEB1-223ENST00000561304 CEP164Q9UPV0 1460 aa13.83□□□□□ -0.19
ZEB1-223ENST00000561304 CCDC88BA6NC98 1476 aa13.8□□□□□ -0.2
ZEB1-223ENST00000561304 URB2Q14146 1524 aaKnown RBP13.75□□□□□ -0.21
ZEB1-223ENST00000561304 TOPBP1Q92547 1522 aa13.61□□□□□ -0.23
ZEB1-223ENST00000561304 DNMBPQ6XZF7 1577 aa13.59□□□□□ -0.23
ZEB1-223ENST00000561304 C1QBPQ07021 282 aaKnown RBP13.59□□□□□ -0.23
ZEB1-223ENST00000561304 ZNF608Q9ULD9 1512 aaPredicted RBP13.55□□□□□ -0.24
ZEB1-223ENST00000561304 EIF4G3O43432 1585 aaKnown RBP13.54□□□□□ -0.24
ZEB1-223ENST00000561304 TARBP1Q13395 1621 aaKnown RBP13.53□□□□□ -0.24
ZEB1-223ENST00000561304 IFT140Q96RY7 1462 aa13.53□□□□□ -0.24
ZEB1-223ENST00000561304 ABCC8Q09428 1581 aa13.51□□□□□ -0.25
ZEB1-223ENST00000561304 SLC4A1APQ9BWU0 796 aaKnown RBP13.5□□□□□ -0.25
ZEB1-223ENST00000561304 POTEHQ6S545 545 aa13.49□□□□□ -0.25
ZEB1-223ENST00000561304 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.49□□□□□ -0.25
ZEB1-223ENST00000561304 POLA1P09884 1462 aaPredicted RBP13.48□□□□□ -0.25
ZEB1-223ENST00000561304 CUX1P39880 1505 aa13.47□□□□□ -0.25
ZEB1-223ENST00000561304 CHD1O14646 1710 aa13.46□□□□□ -0.25
ZEB1-223ENST00000561304 SUPT5HO00267 1087 aaKnown RBP13.45□□□□□ -0.26
ZEB1-223ENST00000561304 WDR97A6NE52 1622 aa13.44□□□□□ -0.26
ZEB1-223ENST00000561304 RAD54L2Q9Y4B4 1467 aa13.43□□□□□ -0.26
ZEB1-223ENST00000561304 FGD5Q6ZNL6 1462 aa13.42□□□□□ -0.26
ZEB1-223ENST00000561304 AQRO60306 1485 aaKnown RBP eCLIP13.41□□□□□ -0.26
ZEB1-223ENST00000561304 OSCARQ8IYS5 282 aa13.36□□□□□ -0.27
ZEB1-223ENST00000561304 PBRM1Q86U86 1689 aa13.36□□□□□ -0.27
ZEB1-223ENST00000561304 RIMBP3CA6NJZ7 1639 aa13.36□□□□□ -0.27
ZEB1-223ENST00000561304 RIMBP3BA6NNM3 1639 aa13.36□□□□□ -0.27
ZEB1-223ENST00000561304 RIMBP3Q9UFD9 1639 aa13.36□□□□□ -0.27
ZEB1-223ENST00000561304 SOGA1O94964 1423 aa13.36□□□□□ -0.27
ZEB1-223ENST00000561304 SLC4A2P04920 1241 aa13.35□□□□□ -0.27
ZEB1-223ENST00000561304 BIVM-ERCC5R4GMW8 1640 aa13.33□□□□□ -0.28
ZEB1-223ENST00000561304 TDRD9Q8NDG6 1382 aaKnown RBP13.33□□□□□ -0.28
ZEB1-223ENST00000561304 SYNJ1O43426 1573 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms