RNA–Protein interactions for RNA: ENST00000560834.1

CTDSPL2-210, Transcript of CTD small phosphatase like 2, humanhuman

TSL 4

Gene CTDSPL2, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-210ENST00000560834 AEBP2Q6ZN18 517 aaPredicted RBP19.5■□□□□ 0.71
CTDSPL2-210ENST00000560834 CHIC1Q5VXU3 224 aa18.33■□□□□ 0.52
CTDSPL2-210ENST00000560834 SENP3Q9H4L4 574 aaPredicted RBP16.92■□□□□ 0.3
CTDSPL2-210ENST00000560834 NISCHQ9Y2I1 1504 aa16.91■□□□□ 0.3
CTDSPL2-210ENST00000560834 POTEDQ86YR6 584 aa16.81■□□□□ 0.28
CTDSPL2-210ENST00000560834 PHF23Q9BUL5 403 aaPredicted RBP16.51■□□□□ 0.23
CTDSPL2-210ENST00000560834 FOXD1Q16676 465 aa15.83■□□□□ 0.12
CTDSPL2-210ENST00000560834 MSH5O43196 834 aa15.35■□□□□ 0.05
CTDSPL2-210ENST00000560834 CCDC180Q9P1Z9 1646 aa15.01□□□□□ -0.01
CTDSPL2-210ENST00000560834 PIAS4Q8N2W9 510 aaPredicted RBP14.57□□□□□ -0.08
CTDSPL2-210ENST00000560834 ABCC9O60706 1549 aa14.36□□□□□ -0.11
CTDSPL2-210ENST00000560834 ZCCHC6Q5VYS8 1495 aaKnown RBP14.18□□□□□ -0.14
CTDSPL2-210ENST00000560834 DCAF1Q9Y4B6 1507 aa14.03□□□□□ -0.16
CTDSPL2-210ENST00000560834 MYO15BQ96JP2 1530 aa14□□□□□ -0.17
CTDSPL2-210ENST00000560834 NACADO15069 1562 aa13.98□□□□□ -0.17
CTDSPL2-210ENST00000560834 RB1CC1Q8TDY2 1594 aa13.95□□□□□ -0.18
CTDSPL2-210ENST00000560834 PPP6R1Q9UPN7 881 aa13.91□□□□□ -0.18
CTDSPL2-210ENST00000560834 CACNB1Q02641 598 aaPredicted RBP13.85□□□□□ -0.19
CTDSPL2-210ENST00000560834 ADRA2BP18089 450 aa13.82□□□□□ -0.2
CTDSPL2-210ENST00000560834 DCAF8L2P0C7V8 631 aa13.81□□□□□ -0.2
CTDSPL2-210ENST00000560834 PLPPR3Q6T4P5 718 aa13.76□□□□□ -0.21
CTDSPL2-210ENST00000560834 UNC13AQ9UPW8 1703 aa13.74□□□□□ -0.21
CTDSPL2-210ENST00000560834 SCRIBQ14160 1630 aa13.68□□□□□ -0.22
CTDSPL2-210ENST00000560834 BICRAQ9NZM4 1560 aa13.56□□□□□ -0.24
CTDSPL2-210ENST00000560834 SHROOM4Q9ULL8 1493 aa13.42□□□□□ -0.26
CTDSPL2-210ENST00000560834 PABPN1Q86U42 306 aaKnown RBP eCLIP13.37□□□□□ -0.27
CTDSPL2-210ENST00000560834 DMRT2Q9Y5R5 561 aa13.21□□□□□ -0.29
CTDSPL2-210ENST00000560834 EIF4G1Q04637 1599 aaKnown RBP13.16□□□□□ -0.3
CTDSPL2-210ENST00000560834 CECR2Q9BXF3 1484 aa13.13□□□□□ -0.31
CTDSPL2-210ENST00000560834 SMARCA4P51532 1647 aa13.11□□□□□ -0.31
CTDSPL2-210ENST00000560834 BAZ1AQ9NRL2 1556 aaPredicted RBP13.1□□□□□ -0.31
CTDSPL2-210ENST00000560834 MROH2BQ7Z745 1585 aa13.04□□□□□ -0.32
CTDSPL2-210ENST00000560834 CC2D2AQ9P2K1 1620 aa13.04□□□□□ -0.32
CTDSPL2-210ENST00000560834 MAPK8IP2Q13387 824 aaPredicted RBP13.02□□□□□ -0.33
CTDSPL2-210ENST00000560834 PEG3Q9GZU2 1588 aa12.99□□□□□ -0.33
CTDSPL2-210ENST00000560834 POTEHQ6S545 545 aa12.99□□□□□ -0.33
CTDSPL2-210ENST00000560834 WIZO95785 1651 aa12.94□□□□□ -0.34
CTDSPL2-210ENST00000560834 RSF1Q96T23 1441 aaPredicted RBP12.94□□□□□ -0.34
CTDSPL2-210ENST00000560834 RNF39Q9H2S5 420 aa12.93□□□□□ -0.34
CTDSPL2-210ENST00000560834 SMARCA2P51531 1590 aa12.93□□□□□ -0.34
CTDSPL2-210ENST00000560834 ATAD2BQ9ULI0 1458 aa12.92□□□□□ -0.34
CTDSPL2-210ENST00000560834 DNAJC5BQ9UF47 199 aa12.9□□□□□ -0.34
CTDSPL2-210ENST00000560834 HMGXB3Q12766 1538 aa12.89□□□□□ -0.35
CTDSPL2-210ENST00000560834 NCAPD3P42695 1498 aa12.86□□□□□ -0.35
CTDSPL2-210ENST00000560834 BAZ1BQ9UIG0 1483 aaKnown RBP12.83□□□□□ -0.36
CTDSPL2-210ENST00000560834 TOP2AP11388 1531 aaKnown RBP12.82□□□□□ -0.36
CTDSPL2-210ENST00000560834 DCAF8L1A6NGE4 600 aa12.78□□□□□ -0.36
CTDSPL2-210ENST00000560834 SCAF1Q9H7N4 1312 aaKnown RBP12.78□□□□□ -0.36
CTDSPL2-210ENST00000560834 C1QBPQ07021 282 aaKnown RBP12.73□□□□□ -0.37
CTDSPL2-210ENST00000560834 SUPT5HO00267 1087 aaKnown RBP12.66□□□□□ -0.38
CTDSPL2-210ENST00000560834 CCDC88BA6NC98 1476 aa12.6□□□□□ -0.39
CTDSPL2-210ENST00000560834 PRDM2Q13029 1718 aa12.55□□□□□ -0.4
CTDSPL2-210ENST00000560834 LAMC3Q9Y6N6 1575 aa12.54□□□□□ -0.4
CTDSPL2-210ENST00000560834 NESP48681 1621 aa12.51□□□□□ -0.41
CTDSPL2-210ENST00000560834 CFTRP13569 1480 aa12.49□□□□□ -0.41
CTDSPL2-210ENST00000560834 CADPSQ9ULU8 1353 aa12.47□□□□□ -0.41
CTDSPL2-210ENST00000560834 KIF21AQ7Z4S6 1674 aa12.45□□□□□ -0.42
CTDSPL2-210ENST00000560834 KCNA4P22459 653 aa12.42□□□□□ -0.42
CTDSPL2-210ENST00000560834 FANCD2Q9BXW9 1451 aa12.37□□□□□ -0.43
CTDSPL2-210ENST00000560834 THOC2Q8NI27 1593 aaKnown RBP12.36□□□□□ -0.43
CTDSPL2-210ENST00000560834 PDS5BQ9NTI5 1447 aa12.36□□□□□ -0.43
CTDSPL2-210ENST00000560834 CEP164Q9UPV0 1460 aa12.34□□□□□ -0.43
CTDSPL2-210ENST00000560834 ERCC6Q03468 1493 aa12.33□□□□□ -0.44
CTDSPL2-210ENST00000560834 MRC2Q9UBG0 1479 aa12.28□□□□□ -0.44
CTDSPL2-210ENST00000560834 HOXD11P31277 338 aaPredicted RBP12.28□□□□□ -0.44
CTDSPL2-210ENST00000560834 WDR62O43379 1518 aa12.27□□□□□ -0.44
CTDSPL2-210ENST00000560834 URB2Q14146 1524 aaKnown RBP12.27□□□□□ -0.45
CTDSPL2-210ENST00000560834 ABCC8Q09428 1581 aa12.26□□□□□ -0.45
CTDSPL2-210ENST00000560834 DNMBPQ6XZF7 1577 aa12.25□□□□□ -0.45
CTDSPL2-210ENST00000560834 BIVM-ERCC5R4GMW8 1640 aa12.23□□□□□ -0.45
CTDSPL2-210ENST00000560834 SYNJ1O43426 1573 aa12.23□□□□□ -0.45
CTDSPL2-210ENST00000560834 CUX1P39880 1505 aa12.23□□□□□ -0.45
CTDSPL2-210ENST00000560834 TOPBP1Q92547 1522 aa12.22□□□□□ -0.45
CTDSPL2-210ENST00000560834 TOP2BQ02880 1626 aa12.2□□□□□ -0.46
CTDSPL2-210ENST00000560834 WRNQ14191 1432 aaPredicted RBP eCLIP12.19□□□□□ -0.46
CTDSPL2-210ENST00000560834 PPP4R3CPQ6ZMV5 832 aa12.16□□□□□ -0.46
CTDSPL2-210ENST00000560834 CUX2O14529 1486 aa12.15□□□□□ -0.46
CTDSPL2-210ENST00000560834 WDR97A6NE52 1622 aa12.14□□□□□ -0.47
CTDSPL2-210ENST00000560834 POLA1P09884 1462 aaPredicted RBP12.14□□□□□ -0.47
CTDSPL2-210ENST00000560834 FGD5Q6ZNL6 1462 aa12.14□□□□□ -0.47
CTDSPL2-210ENST00000560834 TARBP1Q13395 1621 aaKnown RBP12.11□□□□□ -0.47
CTDSPL2-210ENST00000560834 EHMT2Q96KQ7 1210 aa12.09□□□□□ -0.47
CTDSPL2-210ENST00000560834 IFT140Q96RY7 1462 aa12.06□□□□□ -0.48
CTDSPL2-210ENST00000560834 RAD54L2Q9Y4B4 1467 aa12.05□□□□□ -0.48
CTDSPL2-210ENST00000560834 EIF4G3O43432 1585 aaKnown RBP12.04□□□□□ -0.48
CTDSPL2-210ENST00000560834 ABCA10Q8WWZ4 1543 aa12.03□□□□□ -0.48
CTDSPL2-210ENST00000560834 ABCA5Q8WWZ7 1642 aa12.03□□□□□ -0.48
CTDSPL2-210ENST00000560834 SOGA1O94964 1423 aa12.01□□□□□ -0.49
CTDSPL2-210ENST00000560834 ZNF608Q9ULD9 1512 aaPredicted RBP12.01□□□□□ -0.49
CTDSPL2-210ENST00000560834 PBRM1Q86U86 1689 aa11.99□□□□□ -0.49
CTDSPL2-210ENST00000560834 NCBP3Q53F19 620 aaKnown RBP11.98□□□□□ -0.49
CTDSPL2-210ENST00000560834 TRIM41Q8WV44 630 aa11.94□□□□□ -0.5
CTDSPL2-210ENST00000560834 AQRO60306 1485 aaKnown RBP eCLIP11.92□□□□□ -0.5
CTDSPL2-210ENST00000560834 GAPVD1Q14C86 1478 aa11.91□□□□□ -0.5
CTDSPL2-210ENST00000560834 RNF216Q9NWF9 866 aaPredicted RBP11.91□□□□□ -0.5
CTDSPL2-210ENST00000560834 TDRD9Q8NDG6 1382 aaKnown RBP11.91□□□□□ -0.5
CTDSPL2-210ENST00000560834 SLC4A1APQ9BWU0 796 aaKnown RBP11.9□□□□□ -0.5
CTDSPL2-210ENST00000560834 ERICH3Q5RHP9 1530 aa11.9□□□□□ -0.5
CTDSPL2-210ENST00000560834 RUSC2Q8N2Y8 1516 aa11.9□□□□□ -0.5
CTDSPL2-210ENST00000560834 ADAMTS12P58397 1594 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 281 ms